Irvine SQ, Fonseca  VC, Antony R, Zompa  MA (2008) Cis-regulation of the Pax6 gene in the ascidian Ciona intestinalis. Developmental Biology, in press.

Irvine SQ, Smith FW, Zompa MA (2008) Misexpression of a Dlx gene in the ascidian Ciona intestinalis causes disruption of notochord development. Submitted.

Irvine SQ (2007) Whole-mount in-situ hybridization of small invertebrate embryos using laboratory mini-columns. Biotechniques 43: 764-768.

Irvine SQ, Cangiano MC, Millette BJ, Gutter ES (2007) Non-overlapping expression patterns of the clustered Dll-A/B genes in the ascidian Ciona intestinalis. J. Exp. Zool. (Mol. Dev. Evol.) 308B: 428-441.

Irvine SQ, Seaver EC (2006) Early Annelid Development: a Molecular Perspective. pp 91-138. In Rouse G, Pleijel F, eds. Reproductive Biology and Phylogeny of Annelida. Jamieson BJM, series ed. Science Publishers: New Hampshire, USA.

Sumiyama K, Irvine SQ, Ruddle FH (2003) The role of gene duplication in the evolution and function of the vertebrate Dlx/distal-less bigene clusters. J. Struc. Func. Genomics 3: 151-159. 

Irvine SQ, Carr JL, Bailey W, Amemiya C, Ruddle FH (2002) Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus. J. Exp. Zool. (Mol. Dev. Evol.) 294:47-62.

Sumiyama K, Irvine SQ, Stock DW, Weiss KM, Kawasaki K, Shimizu N, Shashikant CS, Miller W, Ruddle FH (2002) Genomic structure and functional control of the Dlx3-7 bigene cluster. Proc. Natl. Acad. Sci. USA 99:780-785.

Irvine SQ, Martindale MQ (2001) Comparative analysis of Hox gene expression patterns in the polychaete Chaetopterus: implications for the evolution of body plan regionalization. Am. Zool. 41:640-651.

Seaver E, Paulson D, Irvine SQ, Martindale MQ (2001) The spatial and temporal expression of Ch-en, the engrailed gene in the polychaete Chaetopterus, does not support a role in body axis segmentation. Dev. Biol. 236:195-209.

Peterson KJ, Irvine SQ, Cameron RA, Davidson EH (2000) Quantitative assessment of Hox complex expression in the indirect development of the polychaete annelid Chaetopterus sp. Proc. Natl. Acad. Sci. USA  97:4487-4492. 

Irvine SQ, Martindale MQ (2000) Expression patterns of anterior Hox genes in the polychaete Chaetopterus: Correlation with morphological boundaries. Dev. Biol. 217:333-351.

Irvine SQ, Chaga O, Martindale MQ (1999) Larval ontogenetic stages of Chaetopterus: Developmental heterochrony in the evolution of chaetopterid polychaetes. Biol. Bull. 197:319-331.

Irvine SQ, Warriner S, Hunter J, Martindale MQ (1997) A survey of homeobox genes in Chaetopterus variopedatus and analysis of polychaete homeodomains. Mol. Phylogen. Evol. 7:331-345.

Panganiban G, Irvine SM, Lowe C, Roehl H, Corley LS, Sherbon B, Grenier JK, Fallon JF, Kimble J, Walker M, Wray GA, Swalla BJ, Martindale MQ, Carroll SB (1997) The origin and evolution of animal appendages.  Proc. Natl. Acad. Sci. USA 94:5162-5166. (SMI is co-first author)

Irvine SM, Martindale MQ (1996) Cellular and molecular mechanisms of segmentation in annelids.  Sem. Devel. Biol. 7:593-604.