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RI-INBRE > Equipment > SELDI-TOF ProteinChip System

SELDI-TOF ProteinChip System

Ciphergen’s ProteinChip® System is comprised of a ProteinChip Reader integrated with ProteinChip Software and a personal computer to analyze proteins captured on ProteinChip Arrays. The ProteinChip System detects and accurately calculates the mass of compounds ranging from small molecules and peptides of less than 1000 Da up to proteins of 500 kDa or more based on measured time-of-flight.

ProteinChip Arrays

Ciphergen’s ProteinChip Arrays distinguish this technology from other mass spectrometry-based analytical systems. ProteinChip Arrays provide a variety of surface chemistries that allow researchers to optimize protein capture and analysis. The surface chemistries of the arrays include a series of classic chromatographic chemistries and specialized affinity capture surfaces. Classic chromatographic surfaces include normal phase for generic protein binding; hydrophobic surfaces for reversed-phase capture; cation- and anion-exchange surfaces; and immobilized metal affinity capture (IMAC) for metal-binding proteins. Specific proteins of interest can be covalently immobilized on pre-activated surface arrays, enabling customized experiments to investigate antibody-antigen, DNA-protein, receptor-ligand, and other molecular interactions.

The ProteinChip Reader

The ProteinChip Reader is a laser desorption/ionization time-of-flight mass spectrometer that uses state-of-the-art ion optic and laser optic technology. The laser optics maximize ion extraction efficiency over the greatest possible sample area, and thus increase analytical sensitivity and reproducibility. The Reader’s ion optics incorporate a four-stage, time-lag-focusing ion lens assembly that provides precise, accurate molecular weight determination with excellent mass sensitivity.

The ProteinChip Software

Ciphergen’s ProteinChip Software controls all aspects of the ProteinChip Reader and facilitates data collection and analysis. The software uses a Microsoft Windows NT interface, and contains numerous features, including automatic reading of ProteinChip Arrays; multiple spectrum comparison for differential protein display and biomarker discovery; several alternative viewing formats for data; and a user-friendly interface.

The SELDI Process uses a series of ProteinChip Arrays discover, characterize and develop assays for unique proteins.

Using SELDI technology, the ProteinChip Biology System inbregs new analytical capabilities such as:

  • Quickly resolve mixtures of proteins and protein fragments that are either too small or have extreme pI’s for gel electrophoresis.
  • Develop fast purification methods without columns using a variety of surface chemistries and buffer conditions.

The ProteinChip Biology System enables you to quickly determine proteomic changes in response to specific stimuli, and is unique in its ability to analyze trace (low femtomole) analytes from crude, low-volume samples.

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Important Dates
 

8/6/08 - 8/8/08 - 2nd Biennial National IDeA Symposium of Biomedical Research Excellence

Wardman Park Marriott Hotel, Washington, D.C.


 Supported by grant #  P20RR016457 from:

 

 

 

 

 

 

 

 

 

 

Contact Info
Contact RI INBRE:  
University of Rhode Island
Fogarty Hall
| 41 Lower College Rd | Kingston, RI 02881
Phone: (401) 874-9288 | Fax: (401) 874-2646 | E-mail: riinbre@etal.uri.edu