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Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2008

Environment & Life Sciences
Biological Sciences

Amani, Matin, Richa Gujrati, Kristin Meader, Robert B. Hill and Ying Sun. "Simulation of Shortening-Deactivation and Stretch-Activation During Spontaneous Contraction of Bivalve Cardiac Muscles." IN: Proceedings of the 34th Annual Northeast Bioengineering Conference. 2008.  p.11-12.

Bastow, Justin L., Evan L. Preisser and Donald R. Strong. "Holcus lanatus Invasion Slows Decomposition Through Its Interaction With a  Macroinvertebrate Detritivore, Porcellio scaber." Biological Invasions. 10(2):191-199. February 2008.

Bastow, Justin L., Evan L. Preisser and Donald R. Strong. "Wood Decomposition Following a Perennial Lupine Die-Off: A 3-Year Litterbag Study." Ecosystems. 11(3):442-453. April 2008.

Blanchette, Matthew D., Frank W. Smith, Michael A. Zompa and Steven Q. Irvine. "Quantitative RT-PCR Analysis of DII-B Misexpression in the Ascidian Chordate Ciona intestinalis (Abstract)." Developmental Biology. 319:566. July 15,  2008.

Carlton, James T.  SEE: Chapman, J. W.; Mathieson, Arthur C.

Carrington, Emily.  SEE also: Dimond, J.; Schmidt, Paul S.

Carrington, Emily. "Along the Silk Road, Spiders Make Way for Mussels." Trends in Technology. 26(2):556+. 2008.

Caswell, Todd, Richard Casagrande, Brian Maynard and Evan Preisser. Production and Evaluation of Eastern Hemlocks (Tsuga canadensis) Potentially Resistant to the Hemlock Woolly Adelgid (Adelges tsugae). IN: Fourth Symposium on Hemlock Wooley Agelid in the Eastern United States, Hartford, CT, February 12-14, 2008.   p.124-134. http://www.threatenedforests.com/research/production-evaluation-of-hemlock-resistance/

Chapman, J. W., A. M. H. Blakeslee, J. T. Carlton and M. R. Bellinger. "Parsimony Dictates a Human Introduction: On the Use of Genetics and Other Data to Distinguish Between the Natural and Human-Mediated Invasion of the European Snail Littorina littorea in North America." Biological Invasions. 10(2):131-133. February 2008.

Childress, James J., Brad A. Seibel and Erik V. Thuesen. "N-Specific Metabolic Date Are Not Relevant to the 'Visual Interactions' Hypothesis Concerning the Depth-Related Declines in Metabolic Rates: Comment on Ikea et al. (2006)." Marine Ecology Progress Series. 373:187-191. 2008.

Cobb, J. Stanley.   SEE also: Fogarty, M.

Cobb, J. Stanley. "Lobsters, West Nile Virus and Methoprene." Providence Journal. June 21, 2008.  p.F3.

Coglianese, Debra L., Stuart I. Cromarty and G. Kass-Simon. "Perception of the Steroid Hormone 20-Hydroxydecdysone Modulates Agonistic Interactions in Homarus americanus." Animal Behaviours. 75(6):2023-2-34. June 2008.

Cromarty, Stuart I.  SEE: Coglianese, Debra L.

Deacutis, Christopher F.  SEE also: Saarman, Emily.

Deacutis, Christopher F. "Evidence of Ecological Impacts From Excess Nutrients in Upper Narragansett Bay."  IN: Desbonnet, Alan and Barry A. Costa-Pierce, Editors. Science for Ecosystem-Based Management: Narragansett Bay in the 21st Century. Springer. (Springer Series in Environmental Management) 2007.   p.349-381.

Dimond, J. and E. Carrington. "Symbiosis Regulation is a Facultatively Symbiotic Temperate Coral: Zooxanthellae Division and Expulsion." Coral Reefs. 27(3):601-604. September 2008.

Elkinton, Joseph S., Evan Preisser, George Boettner and Dylan Parry. "Factors Influencing Larval Survival of the Invasive Browntail  Moth (Lepidoptera: Lymantriidae) in Relict North American Populations." Environmental Entomology. 37(6):1429-1437. December 2008.

Fabry, Victoria J., Brad A. Seibel, Richard A. Feely and James C. Orr. "Impacts of Ocean Acidification on Marine Fauna and Ecosystem Processes." ICES Journal of Marine Science. 65(3):414-432. April 2008.

Fay, Richard R., Arthur N. Popper and Jacqueline Webb. "Introduction to Fish  Bioacoustics."  IN:  Webb, Jacqueline F, Richard R. Fay and Arthur N. Popper, Editors. Fish Bioacoustics. Springer  (Springer Handbook of Auditory Research vol.) 2008.

Filardo, Edward J., Jeffrey A. Quinn and Edmond Sabo. "Association of the Membrane Estrogen Receptor, GPR30, With Breast Tumor Metastasis and Transactivation of the Epidermal Growth Factor Receptor." Steroids. 73:870-873. 2008.

Flammang, Brooke E. and George V. Lauder. "Speed-Dependent Intrinsic Caudal Fin Muscle Recruitment During Steady Swimming in Bluegill Sunfish, Lepomis macrochirus." Journal of Experimental Biology. 211(4):587-598. February 2008.

Fogarty, M. and J. Stanley Cobb. Dynamics of Exploited Crustacean Populations. Blackwell Science. 2008.  464p.

Gerry, Shannon P., Jason B. Ramsay, Mason. N. Dean and Cheryl D. Wilga. "Evolution of Asynchronous Motor Activity in Paired Muscles: Effects of Ecology, Morphology, and Phylogeny." Integrative and Comparative Biology. 48(2):272-282. August 2008.

Goldsmith, Marian R.   SEE also: Proestou, Dina; Yamamoto, Kimiko; Yasukochi, Yuji.

Goldsmith, Marian R. and Frantisek Marec. Molecular Biology and Genetics of the Lepidopteraa. CRC. (Current Topics in Microbiology) 2008.  (Originally Published 1995)

Gujarati, Richa, Kristin Meader, Matin Amani, Robert Hill and Ying Sun. "A Muscular Mechanics Experiment for Biomedical Engineering Using Bivalve Cardiac Tissue." IN: Proceedings of the 34th Annual Northeast Bioengineering Conference. 2008.  p.93-94.

Heppner, Frank. "The Advantages of Avatars (Letter)." Chronicle of Higher Education. 54(33):B26. April 25, 2008.

Hill, Robert B.  SEE: Amani, Matin; Gujarati, Richa; Opuszynski, Michael.

Ingwell, Laura, Brian Maynard, Richard Casagrande and Evan Preisser. "Naturally Occurring Adelgid Resistance in Eastern Hemlocks (Abstract)."  IN: Fourth Symposium on Hemlock Wooley Adelgid in the Eastern United States, Hartford, CT, February 12-14, 2008.

Irvine, Steven Q.   SEE also: Blanchette, Mattew D.

Irvine, Steven Q., Vera C. Fonesca, Michael A. Zompa and Rajee Antony. "Cis-Regulatory Organization of the Pax6 Gene in the Ascidian Ciona intestinalis." Developmental Biology. 317(2):649-659. May 15, 2008.

Irvine, Steven Q., Matthew D. Blanchette, Michael A. Zompa and Frank W. Smith. "Early Zygotic Gene Regulatory Network for Epidermis in the Ascidian C. intestinalis (Abstract)." Developmental Biology. 319(2):588. July 15, 2008.

Jackson, Donald C.  SEE also: Rohasliney, H.; Warren, Daniel E.

Jackson, Donald C., Marty O'Connell, Julie Delabbio, Mark S. Peterson, Jim Franks and Harriet Perry. "After the Storm: Post-Katrina Reflections From AFS Members in Louisiana and Mississippi." Fisheries. 33(4):186-191. April 2008.

Kass-Simon, Gabriele.  SEE: Coglianese, Debra L.; Scappaticci, A. A.

Killingbeck, Keith T.  SEE also: Smith, Stephen M.

Killingbeck, Keith. "Book Review: Metamorphosis of an Ecological Ecoscience: Newton, Julianne Lutz. Aldo Leopolds's Odyssey." Landscape Ecology. 23(1):123-124. January 2008.

Killingbeck, Keith T. "Can Zinc Influence Nutrient Resorption? A Test With the Drought-Deciduous Desert Shrub Fouquieria splendens (ocotille)." Plant and Soil. 304(1-2):145-155. March 2008.

Kim, E., C. E. Lane, C. Kozera,  B. Curtis, S. Bowman and J. M. Archibcald. "Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)." BMC Genomics. 9:215. 2008.

Konow, Nicolai and Christopher P. J. Sanford. "Biomechanics of a Convergently Derived Prey-Processing Mechanism in Fishes: Evidence From Comparative Tongue Bite Apparatus." Journal of Experimental Biology. 211(24):3374-3388. December 2008.

Konow, Nicolai, Ariel L. Camp and Christopher P. J. Sanford. "Congruence Between Muscle Activity and Kinematics in a Convergently Derived Prey-Processing Behavior." Integrative and Comparative Biology. 48(2):246-260. August 2008.

Konow, Nicolai and Christopher P. J. Sanford. "Is a Convergently Derived Muscle-Activity Pattern Driving Novel Raking Behaviours in Teleosat Fishes?" Journal of Experimental Biology. 211(6):989.  March 2008.

Lane, Christopher E.  SEE also: Kim, E.; Phipps, Kyle D.; Schneider, Craig W.

Lane, Christopher E. and John M. Archibald. "The Eukaryotic Tree of Life: Endosymbiosis Takes Its TOL." Trends in Ecology & Evolution. 23(5):268-275. May 2008.

Lane, Christopher E. and John M. Archibald. "New Marine Members of the Genus Hemiselmis (Cryptomonadales, Cryptophyceae)." Journal of Phycology. 44(2)P:439-450.April  2008.

Lauder, George V.  SEE also: Flammang, Brooke E.; Nauwelaerts, Sandra; Taft, N. K.; Tytell, Eric D.

Lauder, George V. and Peter G. A. Madden. "Advances in Comparative Physiology From High-Speed Imaging of Animal and Fluid Motion." Annual Review of Physiology. 70:143-164. March 2008.

Lauder, George V. "Book Review: Flow Phenomena in Nature, Volumes 1 and 2. R. Liebe, Editor." Integrative and Comparative Biology. 48(1):153. July 2008.

Mathieson, Arthur C., Clinton J.  Dawes, Judith Pederson, Rebecca A. Gladych and James T. Carlton. "The Asian Red Seaweed Grateloupia turuturu (Rhodophyta) Invates the Gulf of Maine." Biological Invasions. 10(7):985-988. October 2008.

Miller-Pierce, M., E. Preisser and D. orwig. "Interactions Between Invasive Herbivores: Adelges tsugae, Florinia externa, and Their Impact on Eastern Hemlock Growth and Foliar Chemistry." IN: Fourth Symposium on Hemlock Wooley Agelid in the Eastern United States, Hartford, CT, February 12-14, 2008.  p.224-245. http://www.threatenedforests.com/research/production-evaluation-of-hemlock-resistance/

Nauwelaerts, Sandra, Cheryl D. Wilga, George V. Lauder and Christopher P. Sanford. "Fluid Dynamics of Feeding Behaviour in White-Spotted Bamboo Sharks." Journal of Experimental Biology. 211(19):3095-3102. October 2008.

Oczkowski, Autumn, Scott Nixon, Kelly Henry, Peter DiMilla, Michael Pilson, Stephen Granger, Betty Buckley, Carol Thornber, Richard McKinney and Joaquin Chaves. "Distribution and Trophic Importance of Anthropogenic Nitrogen in Narragansett Bay: An Assessment Using Stabile Isotopes." Estuaries and Coasts. 31(1):53-69. February 2008.

Opuszynski, Michael, M. Amani, R. Hill and Y. Sun. "Force Clamp Development Using a PIC Microcontroller for Study of Clam Cardiac Tissue Force Potentials."  IN: Proceedings of the Society for Nueroscience 38th Annual Meeting, Washington, D. C., November 15-19, 2008.

Opuszynski, Michael, Jeremy Helbig, Zack Weber, Robert Hill and Ying Sun. "A Force-Clamp System for Studying Muscular Mechanics based on a Microcontroller." IN: Proceedings of the 34th Annual Northeast Bioengineering Conference. 2008. p.186-187.

Paskaleva, Elena E., Xudong Lin, Karen Duus, James J. McSharry, Jean-Claude L. Veille, Carol Thornber, Yanze Liu, David Yu-Wei Lee and Mario Canki. "Sargassum fusiforme Fraction Is a Potent and Specific Inhibitor of HIV-1 Fuson and Reverse Transcriptase." Virology Journal. 5:#8. January 15, 2008.

Peckarsky, Barbara L., Peter A. Abrams, Daniel I. Bolnick, Lawrence M. Dill, Jonathan H. Grabowski, Barney Luttberg, John L. Orrock, Scott D. Peacor, Evan L. Preisser, Oswald J. Schmitz and Geoffrey C. Trussell. "Revisiting the Classics: Considering Nonconsumptive Effects in Textbook Examples of Predator-Prey Interactions."  Ecology. 89(9):2416-2425. September 2008.

Phipps, Kyle D., Natalie A. Donaher, Christopher E. Lane and John M. Archibald. "Nucleomoroph Karyotype Diversity in the Freshwater Cryptophyte Genus Cryptomonas." Journal of Phycology. 44(1):11-14. February 2008.

Preisser, Evan L.  SEE also: Bastow, Justin; Caswell, Todd; Elkinton, Joseph S.; Ingwell, Laura;  Peckarsky, Barbara L.; Ram, Karthik;  Schmitz, Oswald J.

Preisser, Evan L., Joseph S. Elkinton and Kristopher Abell. "Evolution of Increased Cold Tolerance During Range Expansion of the Elongate Hemlock Scale Fiorinia Externa Ferris (Hemiptera: Diaspididae)." Ecological Entomology. 33(6):709-715. December 2008.

Preisser, Evan L. and Joseph  S. Elkinton. "Exploitative Competition Between Invasive Herbivores Benefits a Native Host." Ecology. 89(10):2671-2677. October  2008.

Preisser, Evan L. and Daniel I. Bolnick. "The Many Faces of Fear: Comparing the Pathways and Impacts of Nonconsumptive Predator Effects on Prey Populations." PLoS ONE. 3(6):e2465-2 . 2008.

Preisser, Evan L., Alexandra G. Lodge, David A. Orwig and Joseph S. Elkinton. "Range Expansion and Population Dynamics of Co-Occurring Invasive Herbivores." Biological Invasions. 10(2):201-213. February 2008.

Preisser, Evan L. "Trophic Structure."  IN: Encyclopedia of Ecology, Edited by S. E. Jorgensen and Brian Fath. Oxford. 2008.  5:3608-3616.

Preisser, Evan L. and  Daniel L. Bolnick, Guest Editors. "When Predators Don't Eat Their Prey: Nonconsumptive Predator Effects on Prey Dynamics."  Ecology. 89(9):2414-2415. September 2008.

Proestou, Dina A., Marion R. Goldsmith and Saran Twombly. "Patterns of Male Reproductive Success in Crepidula fornicata Provide New Insight for Sex Allocation and Optimal Sex Change." Biological Bulletin. 214(2):194-202. April 2008.

Ram, K., D. S. Gruner, J. P. McLaughlin, E. L. Preisser and D. R. Strong. "Dynamics of a Subterranean Trophic Cascade in Space and Time." Journal of Nematology. 40(2):85-92. June 2008.

Ram, Karthik, Evan L. Preisser, Daniel S. Gruner and Donald R. Strong. "Metapopulation Dynamics Override Local Limits on Long-Term Parasite Persistence." Ecology. 89(12):3290-3297. December 2008.

Rohasliney, H. and D. C. Jackson. "Lignite Mining and Stream Channelization Influences on Aquatic Macroinvertebrate Assemblages Along the Natchez Trace Parkway, Mississippi, USA." Hydrobiologia. 598(1):149-162. 2008.

Rosa, Rui, Heidi M. Dierssen, Liliana Gonzalez and Brad A. Seibel. "Ecological Biogeography of Cephalopod Molluscs in the Atlantic Ocean: Historical and Contemporary Causes of Coastal Diversity Patterns." Global Ecology and Biogeography. 17(5):600-610. September 2008.

Rosa, Rui, Heidi M. Dierssen, Liliana Gonzalez and Brad A. Seibel. "Large-Scale Diversity Patterns of Cephalopods in the Atlantic Open Ocean and Deep Sea." Ecology. 89(12):3449-3461. December.

Rosa, Rui and Brad A. Seibel. "Synergistic Effects of Climate-Related Variables Suggest Future Physiological Impairment in a Top Oceanic Predator." Proceedings of the National Academy of Sciences of the United States of America. 105(52):20776-20780. December 30, 2008.

Saarman, Emily, Warren L. Prell, David W. Murray and Christopher F. Deacutis. "Summer Bottom Water Dissolved Oxygen in Upper Narragansett Bay."   IN: Desbonnet, Alan and Barry A. Costa-Pierce, Editors. Science for Ecosystem-Based Management: Narragansett Bay in the 21st Century. Springer. (Springer Series in Environmental Management) 2007.  p. 325-347.

Sanford, Christopher P. J.  SEE:  Konow, Nicolai; Nauwelaerts, Sarah; Wilga, Cheryl D

Scappaticci, A. A. and G. Kass-Simon. "NMDA and GABAb Receptors Are Involved in Controlling Nematocyst Discharge in Hydra." Comparative Biochemistry and Physics. Pt. A: Molecular & Integrative Physics. 150(4):415-422. August 2008.

Schmidt, Paul S., Ester A. Serrao, Gareth A. Pearson, Cynthia Riginos, Paul D. Rawson, Thomas J. Hilbish, Susan H. Brawley, Geoffrey C. Trussell, Emily Carrington, David S. Wethey, John W. Graham, Francois Bonhamm and David S. Randd. "Ecological Genetics in the  North Atlantic: Environmental Gradients and Adaptation at Specific Loci." Ecology. 89(11):S91-S107. 2008.

Schmitz, Oswald J., Jonathan H. Grabowski, Barbara L. Peckarsky, Evan L. Preisser, Geoffrey C. Trussell and James R. Vonesh. "From Individuals to Ecosystem Function: Toward an Integration of Evolutionary and Ecosystem Ecology."   Ecology. 89(9):2436-2445. September 2008.

Schneider, Craig W. and Christopher E. Lane. "Notes on the Marine Algae of the Bermudas. 9. The Genus Botryocladia (Rhodophyta Rhodymericaceae), Including B. Bermuda, B. Exquisita and B. flookii spp. nov." Phycologia. 47(6):614-629. November 2008.

Seibel, Brad A.  SEE: Childress, James J.; Fabry, Victoria J.; Rosa, Rui; Staaf, Danna J.

Smith, Stephen M., Marybeth Hadney and Keith T. Killingbeck. "Development of Vegetation in Dune Slack Wetlands of Cape Cod National Seashore (Massachusetts, USA)." Plant Ecology. 194(2):243-256. February 2008.

Staaf, Danna J., Susana Camarillo-Coop, Steven H. D. Haddock, Al C. Nyack, John Payne, Cesar A. Salinasz-Zavala, Brad A. Seibel, Lloyd Trueblood, Chad Widmir and William F. Gilly. "Natural Egg Mass Deposition by the Humboldt Squid (Dosidicus gigas) in the Gulf of California and Characteristics of Hatchlings and Paralarvae." Journal of the Marine Biological Association of the United Kingdom. 88(4):757-770. June 2008.

Taft, N. K., G. V. Lauder and P. G. A. Madden. "Functinal Regionalization of the Pectoral Fin of the Benthic Longhorn Sculpin During Station Holding and Swimming." Journal of Zoology. 276(2):159-167. October 2008.

Thornber,  Carol S.  SEE also: Oczkowski, Autumn; Paskaleva, Elena E.

Thornber, Carol S., Emily Jones and John J. Stachowicz. "Differences in Herbivore Feeding Preferences Across a Vertical Rocky Intertidel Gradient." Marine Ecology Progress Series. 363:51-62. July 13, 2008.

Thornber, Carol S., Peter DiMilla, Scott W. Nixon and Richard A. McKinney. "Natural and Anthropogenic Nitrogen Uptake by Bloom-Forming Macroalgae." Marine Pollution Bulletin. 56(2):261-269. February 2008.

Twombly, Saran.  SEE: Proestou, Diana A.

Tytell, Eric D., Emily M. Standen and George V. Lauder. "Escaping Flatland: Three-Dimensional Kinematics and Hydrodynamics of Median Fins in Fishes." Journal of Experimental Biology. 211(2):187-195. January 15,  2008.

Warren, Daniel E. and Donald C. Jackson. "Lactate Metabolism in Anoxic Turtles: An Integrative View." Journal of Comparative Physiology B-Biochemical, Systemic, and Environmental Physiology. 178(2):133-148. February  2008.

Webb, Jacqueline F.  SEE also: Fay,  Richard R.

Webb, Jacqueline F., John C. Montgomery and Joachim Mogdans. "Bioacoustics and the Lateral Line System of Fishes."   IN: Webb, Jacqueline F., Richard R. Fay and Arthur N. Popper., Editors Fish Bioacoustics. Springer  (Springer Handbook of Auditory Research Vol.) 2008.  p.145-182.

Webb, Jacqueline F., Richard R. Fay and Arthur N. Popper, Editors. Fish Bioacoustics. Springer  (Springer Handbook of Auditory Research Vol.) 2008.  318p.

Webb, Jacqueline F., Richard R. Fay and Arthur N. Popper. "Volume Preface."   IN:  Webb, Jacqueline F., Richard R. Fay and Arthur N. Popper Editors. Fish Bioacoustics. Springer  (Springer Handbook of Auditory Research Vol.) 2008.  p.xii-xv.

Wilga, Cheryl D.  SEE also: Gerry, Shannon P.; Nauwelaerts, Sandra.

Wilga, Cheryl A. D. "Evolutionary Divergence in the Feeding Mechanism of Fishes." Acta Geologica Polonica. 58(2):113-120. 2008.

Wilga, Cheryl D. and Christopher P. Sanford. "Suction Generation in White-Spotted Bamboo Sharks Chiloscyllium plagiosum."  Journal of Experimental Biology. 211(19):3128-3138. October 2008.

Yamamoto, Kimiko, Junko Nohata, Keiko Kadono-Okuda, Junko Narukawa, Motoe Sasanuma, Shun-Ichi Sasanuma, Hiroshi Minami, Michihiko Shimomura, Yoshitaka Suetsugu, Yutaka Banno, Kazutoyo Osoegawa, Pieter J. de Jong, Marian R, Goldsmith and Kazuei Mita. "A BAC-Based Integrated Linkage Map of the Silkworm Bombyx mori." Genome Biology. 9:R21.  2008.

Yasukochi, Yuji, Hiroshi Fujii and Marian R. Goldsmith. "Silkworm."  IN: Genome Mapping and Genomics in Animals. Volume 1, Edited by W. Huinter and C. Kole. Springer. 2008.  p.43-57. 


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