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Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2009

ENVIRONMENT & LIFE SCIENCES
Cell & Molecular Biology

Abellar, Roseanna G., John R. Pepperell, David Greco, Fusun Gundogen, Stefan Kostadinal, Joanna Schwartz, Umadevi Tavtravahi and Monique E. DePaepe. "Effects of Chemotherapy During Pregnancy on  the Placenta." Pediatric Developmental Pathology. 12(1):35-41. 2009.

Acosta, Ivan F., Helene Laparra, Sandra P. Romero, Eric Schmelz, Mats Hamberg, John P. Mottinger, Marie A. Moreno and Stephen L. Dellaporta.  "Tasselseed1 Is a Lipaxygenase Affecting Jasmonic Acid Signaling in Sex Determination of Maize." Science. 323(5911):252-255. January 5, 2009.

Ahmadbeni, Yousef, Rakesh K. Tiwari, Gongqin Sun and Keykavous Parang. "Synthesis of Nuceloside Mono-, Di, and Triphosphoranamidates From Solid-Phase CycloSaligenyl Phosphitylating Reagents." Organic Letters. 11(10):2157-2160. May 2, 2009.

Asad, Shadaba and Steven M. Opal. "Bench-to-Bedside Review: Quorum Sensing and the Role of Cell-to-Cell Communication During Invasive Bacterial Infection." Critical Care. 12(6):236. 2009.

Bartlett, John G. and Kenneth Hugh Mayer. "CDC Recommendations for Opt-Out Testing." JAMA. 301(3):275-276. January 21, 2009.

Barton, S., M. Fisher and K. H. Mayer. "Panel Discussion." International Journal of STD & AIDS. 20(Suppl.1):15-16. April 2009.

Brennan, David, Seth Welles, Michael Miner, Michael Ross, Kenneth Mayer and Simon Rosser. "Development of a Treatment Optimism Scale for HIV-Positive Gay and Bisexual Men." AIDS Care, 21(9):1090-1097. 2009.

Canick, Jacob A.  SEE: D'Alton, M. E.; Lambert-Messerlian, G.; Palomaki, G. E.; Vora, N. L.

Chin-Hong, P. V., M. Husnik, R. D. Cranston, G. Colfax, S. Buchbinder, M. DaCosta, T. Darraugh, D. Jones, F,. Judson, B. Koblin, K. H. Mayer and J. M. Palefsky. "Anal Human Papillomavirus Infection Is Associated With HIV Acquisition in Men Who Have Sex With Men." AIDS. 23(9):1135-1142. June 1, 2009.

Cinel, Ismail and Steven M. Opal. "Molecular Biology of Inflammation and Sepsis: A Primer."  Critical Care Medicine. 37(1):291-304. January  20089

Cohen, Paul S.  SEE: Harrington, S. M.; Leatham, M. P.; Mercado-Lubo, R.

Cohen, T., L. Moise, B. Martin and A. S. De Groot. "T Cell Epitope: Friend or Foe? Immunogenicity of Biologics in Context." Advanced Drug Deliveries Reviews. 61(11):965-976. 2009.

D'Alton, M. E., J. Cleary-Goldman, G. Lambert-Messerlian, R. H. Ball, D. A. Nyberg, C. H. Comstock, R. Bukowski, P. Dar, S. D. Craigo, I. E. Timor, S. R. Carr, H. M. Wolfe, K. Dukes, J. A. Canick and F. D. Malone. "Maintaining Quality Assurance for Sonographic Nuchal Translucency Measurement: Lessons From the FASTER Trial." Ultrasound in Obstetrics & Gynecology. 33(2):142-146. February 2009.

de Groot, Anne S.  SEE also: Gregory, Stephen H.; Hai, S.;McLeod, Lorna D.;  Moise, Leonard; Tounkara. K.;  Weber, Costanza A.

De Groot, Anne S. "Article for 'Cover Story in Human Vaccines Journal Exploring the Immune: A Brave New World for Human Vaccine Development." Human Vaccine. 5(12):7900-793. December 2009.

de Groot, A. S., L. Moise, J. Derosiers, C. Eber and M. Martin. "Effective Design of T-Cell Driven Vaccines Applied to the GAIA HIV Vaccine: Advances in Vaccine Design Based on Current Preclinical Success." AIDS Vaccine 2009, Paris, France, 19-22 October 2009.  p.17-26.

de Groot, A. S., L. Moise, J. Derosiers, C. Eber and M. Martin. "Effective Design of T-Cell Driven Vaccines Applied to the GAIA HIV Vaccine: Advances in Vaccine Design Based on Current Preclinical Success (Abstain)." Retrovirology." 6(Suppl.3):P308. 2009.

de Groot, Anne S. and William Martin. "Epitope-Based Immune-Derived Vaccines: A Strategy for Improved Design and Safety."  IN: Immunomics Review, Edited by A. Falus. 2009.  p.39-69.

de Groot, Anne S. "Exploring the Immunome A Brave New World for Human Vaccine Development." Human Vaccines. 5(12):790-793. December 2009.

De Groot, Anne S., Editorial Board. Human Vaccines. Vol.5, 2009.

de Groot, Anne S., Matt Ardito, Elizabeth M. McClaine, Leonard Moise and William Martin. "Immunoinformatic Comparison of T-Cell Epitopes Contained in Novel Swine-Origin Influenza A (H1N1) Virus With Epitopes in 2008-2009 Conventional Influenza Vaccine." Vaccine. 27(42):5740-5747. September 25, 2009.

De Groot, Anne S., Editorial Board. Immunome Research. 2009.

De Groot, A. S., W. Yang, L. Moise, J. A. McMurray, J. Desrosiers and W. Martin. "A Novel Compound for the Treatment of Allergy and Autoimmune Disease. (Abstract)." Journal of Allergy and Clinical Immunology.123(2):S139. 2009.

de Groot, Anne S. and William Martin. "Reducing Risk, Improving Outcomes: Bioengineering Less Immunogenic Protein Therapeutics." Clinical Immunology. 131(2):189-201. May 2009.

De Groot, Leslie J.  SEE also: Inaba, Hidefumi.

De Groot, Leslie J., Young-Ha Shin, Deshun Pan, Geetha Gopalakrishnan and James Hennessey. "Evaluation of T Cell Stimulation by TSH-R Epitopes in Graves' Disease." J. Endocrin. Investig. 32(1):52-56. 2009.

De Groot, Leslie J., Young-Ha Shin, Deshun Pan, Geetha Gopalakrishnan and James Hennessey. "Regulatory T Cells in Graves' Disease." Clinical Endocrinology. 71(4):587-593. 2009.

Deresienski, Adam,  Joel Hague, Kimberly Nelson and Albert Kausch. Male Sterility as a Method for Constructing Wide Crosses and for Gene Confinement in Switchgrass and Other Biofuel Crops." Plant Biology. 2009. Suppl.169.

Dryer, Peter D., Berkeley N. Limkketkai, Christina M. Martin, Gang Ma, Kenneth E. Sheman, Lynn E. Taylor, Kenneth H. Mayer, Denise J. Jamieson and Jason T. Blackard. "Screening for Hepatitis C. Virus Non-Nucleotide Resistance Mutations in Treatment-Naive Women." Journal of Antimicrobial Chemotherapy. 64(5):945-948.November 2009.

Gonquin, Sun and David J. Kemble. "To C or Not to C: Direct and Indirect Redox Regulation of Src Protein Tyrosine Kinase." Cell Cycle. 8(15):2353-2358. 2009.

Gregory, Stephen H., Stephanie Mott, Jennifer Phung, Jinhee Lee, Leonard Moise, Julia A. McMurry, William Martin and Anne S. De Groot. "Epitope-Based Vaccination Against Pneumonic Tularemia." Vaccine. 27(39):5299-6306. August 27, 2009.

Hai, S., J. A. McMurray, P. Knopf, W. Martin and A. S. De Groot. "Immunogenicity Screening Using In Silico Methods: Correlation Between T-Cell Epitope Content and Clinical Immunogenicity of Monoclonal Antibodies."  IN: An, Z. and W. R. Stout, Editors. Therapeutic Antibodies: From Theory to Practice. John Wiley and Sons. 2009.

Harrington, Susan M., Jalaluddi Sheikh, Ian R. Henderson, Fernando Ruiz-Perez, Paul S. Cohen and Jane P. Nataro. "The Pic Protease of Enteroaggregarte Echerichia Coli Promotes Intestinal Colonization and Growth in the Presence of Mucin." Infection and Immunity. 77(6):2466-2473. June 2009.

Howlett, Niall G.  SEE also: Rego, Meghan A.

Howlett, Niall G., Julie A. Harnley, Meghan A. Rego, Frederick W. Kolling IV and Thomas W. Glover. "Functional Interaction Between the Fanconi Anemia D2 Protein and Proliferating Cell Nuclear Antigen (PCNA) With a Conserved Potative PCNA Interaction Motif." Journal of Biological Chemistry. 284(42):28935-289422. October 16, 2009.

Huang, Kezhen, Yue-Hao Wang, Alex Brown and Gongqin Sun. "Identification of N-Terminal Lobe Motifs That Determine the Kinase-Activity of the Catalytic Domains and Regulatory Strategies of Src and Csk Protein Tyrosine Kinases." Journal of Molecular Biology. 386(4):1066-1077. 6 March 2009.

Hufnagel, Linda A.  SEE: Kass-Simon, Gabriele.

Inaba, H., D. Pan, Y. H. Shin, W. Martin, G. Buchman and L. J. DeGroot, "Immune Response of Mice Transgenic for Human Histocompatibility Leukocyte Antigen-DR to Human Thyrotropin Receptor-Extracellular Domain." Thyroid. 11:1271-1280. 2009.

Johnson, Carey V., Matthew J. Mimiaga, Sari L. Reisner, Ashley M. Tetu, Kevin Cranston, Thomas Bertrand, David S. Novack and Kenneth H. Mayer. "Health Care Access and Sexually Transmitted Infection Screening Frequency Among At-Risk Massachusetts Men Who Have Sex With Men." American Journal of Public Health. Suppl. S187-192. March 2009.

Kaplan, G. B., K. A. Leite-Morris, M. A. Klufas and W. Y. Fan. "Intra-VTA Adenosine A(1) Receptor Activation Blocks Morphine Stimulation of Motor Behavior and Cortical and Limbic Fos Immunoreactivity." European Journal of Pharmacology. 602(2-3):268-276. January 14, 2009.

Kass-Simon, Gabriele, Michael A. Zompa, Albert A. Scapatiacci, Robert V. Zackroff and Linda Hufnagel. "Nucleolar Binding of an Antibody in Hydra: A Non-Canonical Role for an NMDA Receptor Protein?" Journal of Experimental Zoology. Pt. A. Ecological Genetics and Physiology. 311(10):763-775. December 1, 2009.

Kausch, Albert P.  SEE also: Deresienski, Adam; Nelson, Kimberly.

Kausch, A. P., J. Hague, A. Derasienski and K. Nelson. "Strategies for Gene Confinement in Genetically Modified Perennial Plants Used for Biofuels (Abstract)." Intercellular & Developmental Biology Annual. 45(Suppl.S):S30. September 2009.

Kemble, David J. and Gongqin Sun. "Direct and Specific Inactivation of Protein Tyrosine Kinases in the Src and FGFR Families by Reversible Cysteine Oxidation." Proceedings of the National Academy of Sciences of the United States of America. 106(13):5070-5075. March 31, 2009.

Kerndt, Peter R., Kenneth H. Mayer, Robert H. Remien, Hong-Ha M. Truong, Ronald A. Brooks, Ofilio R. Vigil, Wayne T. Steward, Mary-Jane Rotheram-Borus and Stephen F. Morin. "Strategies Used in the Detection of Acute/Early HIV Infections. The NIMH Multisite Acute HIV Infection Study: I." AIDS and Behavior. 13(6):1037-1045. 2009.

Kiene, S. M., M. Bateganya, R. Wan Yenze, H. Lute, K. Mayer and M. Stein. "Provider-Initiated HIV Testing in Health  Care Settings: Should It Include Client-Centered Counseling?" Sahara J - Journal of Social Aspects of HIV-AIDS. 6(3):115-119. November 2009.

Kumar, S. Ramesh, Sounya Swaminathan, Timothy Flanigan, Kenneth H. Mayer and R.aymond Niaura. "HIV & Smoking in India." Indian Journal of Medical Research. 130(1):15-22. July 2009.

Kumarasamy, N., Vidya Madhavan. Kartik K. Venkatesh, S. Saravanran, Rami  Kantor, P. Balakrishnan, Bella Devaleenal, S. Poongulali, Tokugha Yepthomi, Sunita Solomon, Kenneth H. Mayer, Constance Benson and Robert Schooley. "High Frequency of Clinically Significant Mutations After First-Line Generic Highly Active Antiretroviral Therapy Failure: Implications for Second Line Options in Resource-Limited Settings." Clinical Infectious Diseases. 49(2):306-309. July 15, 2009.

Kumaresamy, N., K. K. Venkatesh, B. Devaleenol, S. Saghayam, D. Manohar, S. Poongulali, T. Yepthomi, P. Ambvrose, S. Solomon and K. H. Mayer.  "Safe Substitution to Zidovudine Among HIV-Infected Patients Initiated on Stavudine-Containing Highly Active Antiretroviral Therapy From a Resource-Limited Setting." International Journal of Infectious Diseases. 13(6):E360-E364. November 2009.

Lambert-Messerlian, G. E. Palomaki and J. A. Canick. "Adjustment of Serum Markers in First Trimester Screening." Journal of Medical Screening. 16(2):102-103. 2009.

Laterre, Pierre-Francois, Steven M. Opal, Edward Abraham, Steven P. LaRose, Abla P. Creasy, Fang Xie, Lona Poole and Richard G. Wunderink. "A Clinical Evaluation Committee Assessment of Recombinant Human Tissue Factor Pathway Inhibitor (tifacogin) in Patients With Severe-Acquired Pneumonia." Critical Care. 13(2):#R53. 2009.

Leatham, Mary P., Swati Banerjee, Steven M. Autieri, Regino Mercado-Lubo, Tyrrell Conway and Paul S. Cohen. "Pre-Colonized Human Commensal Echerichi coli Strains Serve as a Barrier to E. Coli O157:H7 Growth in the Streptomycin-Treated Mouse Intestine." Infection and Immunity. 77(7):2876-2886. July 2009.

Lin, X., Y. Yang and G. Sun. "In Vitro Characterization of Src Phophorylsation of a Physiological Substrate, Contraction Revealed Intriguing Features (Abstract)." Journal of Investigative Dermatology. 129(Suppl.1):S91. April 2009.

Luu, M. H. T., C. Zhang, C. J. Sung and W. D. Lawrence. "Examination of Deeper Levels Is Useful in Identifying  High Grade Squamous Intraepithelial Lesions in Cervical Biopsies (Abstract)." Laboratory Investigations. 22(Suppl.1):89A. 1 January 2009.

Luu, M. H. T., C. Zhang, C. J. Sung and W. D. Lawrence. "Examination of Deeper Levels Is Useful in Identifying  High Grade Squamous Intraepithelial Lesions in Cervical Biopsies (Abstract)." Modern Pathology. 22(Suppl.1):89A. 1 January 2009.

MacLachlan, E., K. H. Mayer, R. Barnabas, J. Sanchez, B. Koblin and A. Duerr. "The Potential Risk of Biomarkers in HIV Preventive Vaccine Trials." JAIDS-Journal of Acquired Immune Deficiency Syndromes. 51(5):536-545. August 15, 2009.

Manna, P., S. Kerley, R. Garrison, D. Stark, T. Parrish, P. Clark, G. Scholtz, M. R. Quddus and S. Bose. "A Next Generation HPV Test That Simultanerously Detects, Types, and Quantifies All 15 Risk HPVs - Type and Distribution of HPV in Cervical Papa Smears (Abstract)." Laboratory Investigation. 89(Suppl.1):90A. 1 January 2009.

Mayer, Kenneth H.  SEE also: Bartlett, John; Barton, S.; Brennan, David; Chin-Hong, P. V.; Dryer, Peter D.; Johnson, Carey V.; Kerndt, Peter r.; Kiene, S. M.; Kumar, S. Ramesh; Kumarasamy, N.; MacLachlan, E.; Maynard, Emily; Merchant, Roland C.; Mimiaga, Matthew; Morokoff, Patricia J.; Murugavel, K. G.; O'Cleirigh, Conall; Politch, Joseph; Reisner, Sari L.; Remien, Robert H.;  Safren, Steven A.; Saravanran, S.;  Schneider, J. A.; Salomon, Elizabeth A.; Solomon, Suniti; Subbaraman, R.; Szumouski, John D.; Taylor, Lynne E.; Thomas, Beena; Vignish, Ramachandran.

Mayer, Kenneth Hugh and Carol Dukes Hamilton. "Distributing US Health Aid." JAMA. 301(13):1331-1340, April 1, 2009.

Mayer, K. H. "Experience in the USA." International Journal of STD & AIDS. 20(Suppl):2-6. April 2009.

Mayer, Kenneth H. and Steven A. Safren. "Functional Impairment and Health Care Utilization Among HIV-Infected Men Who Have Sex With Men: The Relationship With Depression and Post-Traumatic Stress." Journal of Behavioral Medicine. 32(5):466-477. 2009.

Mayer, Kenneth H. and Hank F. Pizer, Editors. HIV Prevention: A Comprehensive Approach. Academic. 2009.  651p.

Mayer, Kenneth H. and Hank F. Pizer. "Introduction." HIV Prevention: A Comprehensive Approach. Academic. 2009.  p.1-8.

Maynard, Emily, Alex Carballo-Dieguez, Ana Ventuneac, Theresa Exner and Kenneth Mayer. "Women's Experience With Anal Sex: Motivations and Implications for STD Prevention." Perspectives on Sexual and Reproductive Health. 421(3):142-149. 2009.

McCamley, Maureen K., Miha Ravrik, Andrews Artenstein, Steven M. Opal, Slobodun Zumer and Gregory P. Crawford. "Detection of Alignment Changes at the Open Surface of a Confined Nematic Liquid Crystal Sensor." Journal of Applied Physics. 105(12):123504-1`23511. 15 June  2009.

McLeod, Lorna D., A. S. De Groot and Bill Martin. "Biotherapeutics." BioProcess International. 7(S5):28-33. May 2009.

Mercado-Lubo, Regino, Mary P. Leatham, Tyrrell Conway and Paul S. Cohen. "Salmonella enterica Serovar Typhimurium Mutants Unable to Convert Malate to Pyruvate and Oxaloacetate Are Antivirulent and Immunnogenic in BALB/c Mice." Infection and Immunity.77(4):1397-1405. April  2009.

Merchant, Roland, Tse Chiang Lau, Tao Liu, Kenneth H. Mayer and Bruce M. Becker. "Adult Sexual Assault Evaluations at Rhode Island Emergency Departments, 1995-2001." Journal of Urban Health. 86(1):43-53. January 2009.

Merchant, Roland, Jacob E. Nettleton, Kenneth H. Mayer and Bruce M. Becker. "Blood or Body Fluid Exposures and HIV Postexposure Prophylaxis Utilization Among First Responders." Prehospital Emergency Care. 13(1):6-13. January-March 2009

Merchant, Roland C., Bethany M. Catazano, George R. Seage III, Kenneth H. Mayer, Melisssa A.  Clark, V. G. Degruttola and Bruce M. Becker.  "Demographic Variations in HIV Testing History Among Emergency Department Patients: Implications for HIV Screening in US Emergency Departments." Journal of Medical Screening. 16(2):60-66. 2009.

Merchant, Roland C., M. A. Clark, T. J. Langan, G. R. Seage, K. H. Mayer and Victor G. DeGruttola. "Effectiveness of Increasing Emergency Department Patients' Self-Perceived Risk for Being Human Immunodeficiency Virus (HIV) Infected Through Audio Computer Self-Interview-Based Feedback About Reported HIV Risk Behaviors." Academic Emergency Medicine. 169(11):1143-1155. November 2009.

Merchant, Roland C., Melissa A. Clark, George R. Seage III, Kenneth H. Mayer, Victor G. Degruttola and Bruce M. Becker. "Emergency Department Patient Perceptions and Preferences on Opt-In Rapid HIV Screening Program Components." AIDS Care. 21(4):490-500. April 2009.

Merchant, Roland C., Melissa A. Clark, George R. Seage III, Kenneth H. Mayer, Victor G. Degruttola and Bruce M. Becker. "Emergency Department Patient Perceptions and Preferences on Out-In Rapid HIV Screening Program Components." AIDS Care. 86(1):343-63. January 2009.

Merchant, Roland C., Melissa A. Clark, Kenneth H. Mayer, George R. Seage III, Victor De Gruttola and Bruce M. Becker. "Video as an Effective Method to Deliver Pretest Information for Rapid Human Immunodeficiency Testing." Academic Emergency Medicine. 16(2):124-135. February 2009.

Mimiaga, Matthew J., Elizabeth Norman, Debborah Donnell, Steven A. Safren, Karestan C. Koenen, Steven Gortmaker, Conall O'Cleirigh, Margaret A. Chesney, Thomas J.Coates, Beryl A. Koblin and Kenneth H. Mayer. "Childhood Sexual Abuse Is Highly Associated With HIV Risk-Taking Behavior and Infection Among MSM in the EXPLORE Study." Journal of  Acquired Immune Deficiency Syndromes: JAIDS. 51(3):340-348. July 2009.

Mimiaga, M. J., D. J. Helms, S. L. Reisner, C. Grasso, T. Bertrand, D. J. Mosure, H. Weinstock, C. McLean, and K. H. Mayer. "Gonococcal, Chlamydia, and Siphilis Infection Positivity Among MSM Attending a Large Primary Care Clinic, Boston, 2003." Sexually Transmitted Diseases. 36(8):507-511. August 2009.

Mimiaga, Matthew J., Sari I. Reisner, Sean Bland, Margie Skeer, Kevin Cranston, Deborah Isenberg, Benny A. Vega and Kenneth Mayer. "Health System and Personal Barriers Resulting in Decreased Utilization of HIV and STD Testing Services Among At-Risk Black Men Who Have Sex With Men in Massachusetts." AIDS Patient Care and STDs. 23(10):825-835. October 2009.

Mimiaga, Matthew J., Sari I. Reisner, Ashley M. Tetsu, Katherine E. Bonafide, Kevin Cranston, Thomas Bertrand, David S. Novak and Kenneth H. Mayer. "Partner Notification After STD and HIV Exposures and Infections: Knowledge, Attitudes, and Experiences of Massachusetts Men Who Have Sex With Men." Public Health Reports. 124(1):111-119. January/February 2009.

Mimiaga, Matthew, Patricia Case, Carey V. Johnson, Steven A. Safren and Kenneth H. Mayer. "Preexposure Antiretroviral Prophylaxis Attitudes in High-Risk Boston Area Men Who Report Having Sex With Men: Limited Knowledge and Experience But Potential for Increased Utilization After Education." Journal of Acquired Immune Deficiency Syndromes: JAIDS. 50(1):77-86. January 2009.

Mimiaga, Matthew J., Sari I. Reisner, Ashley M. Tetu, David S. Novak and Kenneth H. Mayer. "Psychosocial and Behavioral Predictions of Partner Notification After HIV and STD Exposure and Infection Among MSM." AIDS and Behavior. 13(4):738-745.August 2009.

Mimiaga, Matthew, Sari L. Reisner, Kevin Cranston, Deborah Isenberg, Donna Bright, Gary Daffin, Sean Bland Maura A. Driscoll, Rodney Van Derwarker, Benny Vega and Kenneth H. Mayer. "Sexual Mixing Patterns and Partner Characteristics of Black MSM in Massachusetts at Increased Risk for HIV Infection and Transmission." Journal of Urban Health. 86(4):602-623.July  2009.

Mimiaga, Matthew J. , Sari L. Reisner, Jake P. Tinsley, Kenneth H. Mayer and Steven A. Safren. "Street Workers and Internet Escorts: Contextual and Psychosocial Factors Surrounding HIV Risk Behavior Among Men Who Engage in Sex Work With Other Men." Journal of Urban Health. 86(1):54-66.  January 2009.

Moise, Leonard.  SEE also: Cohen, T.; De Groot, Anne S.; Weber, C. A.

Moise, Lenny, Matt Ardito, Joe Derosiers, Jill Schriewer, Mark Buller, Sharon E. Frey, Stephen H. Gregory, Steven F. Moss, Jinhee Hardy Kornfield, Bill Martin and Anne S. De Groot. "Immunome-Derived Epitope-Driven Vaccines (ID-EDV) Protect Against Viral or Bacterial Challenge in Humanized Mice." Proceedia  in Vaccinology. 1(1):15-22. 2009.

Moise, Leonard, Julie A. McMurray, Soren Buus, Sharon Frey, William D. Martin and Anne S. De Groot. "In Silico-Accelerated Identification of Conserved and Immunogenic Variola/Vaccina T-Cell Epitopes." Vaccine. 27(46):6471-6479. 30 October 2009.

Moise, Leonard, Julie McMurray and Anne S. de Groot. "Mycobacterium Tuberculosis." Vaccines for Biodefense and Emerging and Neglected Diseases. 2009.  p.121-1

Morokoff, Patricia J., Colleen A. Redding, Lisa L. Harlow, Sookhyun Cho, Joseph S. Rossi, Kathryn S. Meir, Kenneth H. Mayer, Beryl Koblon and Pamela Brown-Peterside. "Associations of Sexual Victimization, Depression, and Sexual Assertiveness With Unprotected Sex: A Test of the Multifaced Model of HIV Risk Across Genders." Journal of Applied Biobehavioral Research. 14(1):30-54. January 2009.

Mottinger, John P.  SEE: Acosta, F.

Murugavel, K. G., P. Balakrishnan, J. Mohanakrishnan, S. S. Solomon, E. M. Shankar, S. Pulimi, M. Sundaram, N. Kumarasmy, E. Piwowar-Manning, E. Livant, K. H.  Mayer, S. P. Thyagarajan and S. Solomon. "Establishment of T-Lymphocyte Subset Reference Intervals in a Healthy Adult Population in Chennai, India." Indian Journal of Medical Research. 129(1):59-63. January 2009.

Nelson, David R.  SEE: Rhodes, Ryan G.

Nelson, Kimberly, Joel Hague, and Albert Kausch. "Improved for Tissue Culture and Genetic Transformation of Switchgrass." 2009.  p.169.

O'Cleirigh, Conall, Margie Skeer, Kenneth Mayer and Stevin Safren. "Functional Impairment and Health Care Utilization Among HIV-Infected Men Who Have Sex With Men: The Relationship With Depression and Post-Traumatic Stress." Journal of Behavioral Medicine. 32(5):146-177. October 2009.

Ologun, B. A., M. R. Quddus, C. J. Sung and W. D. Lawrence. "The Pathogenesis of Uterine and Estrauterine Carciosarcoma Appear Similar - An Immunohistochemical Study of PTEN Expression. (Abstract)." Laboratory Investigation. 89(Suppl.1):230A. 1 January 2009.

Ologun, B. A., M. R. Quddus, C. J. Sung and W. D. Lawrence. "The Pathogenesis of Uterine and Estrauterine Carciosarcoma Appear Similar - An Immunohistochemical Study of PTEN Expression. (Abstract)" Modern Pathology. 89(Suppl.1):230A. 1 January 2009.

Opal, Steven M.  SEE also: Asad, Shadaba; Cinel, Ismail; Laterre, Pierre-Francois; McCamley, Maureen K.; Van der Poll, T.

Opal, S. M. and T. Calendra. "Antibiotic Usage and Resistance Gaining or Losing Ground on Infections in Critically Ill Patients (Editorial Material)." Journal of the American Medical Association. 302(21):2367-2368. December 2, 2009.

Opal, S. M. "Coming Soon to an ICU Near You: Seven Pandemic Influenza in ICU Patients in Spain." Critical Care. 13(6):196. 2009.

Opal, S. M., A. C. Kalil, S. P. LaRosa, J. Gogate, M. Lynn and A. E. Wittek. "Influence of Severity of Illness on the Effects of Eritoran Sepsis Study Group." Infection. 37:47. 3 September 2009.

Opal, Steven M. "Swine Flu, Pandemics, and Critical Care (Editorial)." Critical Care. 13(3):#146. 2009.

Opal, Steven M. and Eleni Patrozoo. "Translational Research in the Development of Naval Sepsis Therapeutics: Logical Deductive Reasoning or Mission Impossible?" Critical Care Medicine. 37(1):S10-S15. Suppl.S. January 2009.

Opal, S. M. and S. P. LaRosa. "Year in Review 2008: Critical Care-Sepsis." Critical Care. 13(5):224. 2009.

Palomaki, G. E., J. E. S. Lee, J. A. Canick, G. A. McDowell and A. E. Donnenfeld. "Technical Standards and Guidelines: Prenatal Screening for Down Syndrome That Includes First-Trimester Biochemistry and/or Ultrasound Measurements." Genetics in Medicine. 11(9):669-681. September 2009.

Peng, S. L., R. A. Simon, M. R. Quddus, C. Zhang, W. D. Lawrence and C. J. Sung. "Atypical Tubal Metaplasma in Endomertrial Samplins Is Not Associated With increased Risk of Developing Hyperplasmia or Carcinoma: A Long Term Follow-Up Study of 63 Cases (Abstract)'" Laboratory Investigation. 89(Suppl.1):231A. 1 January 2009.

Peng, S. L., R. A. Simon, M. R. Quddus, C. Zhang, W. D. Lawrence and C. J. Sung. "Atypical Tubal Metaplasma in Endomertrial Samplins Is Not Associated With Increased Risk of Developing Hyperplasmia or Carcinoma: A Long Term Follow-Up Study of 63 Cases (Abstract)." Modern Pathology. 89(Suppl.1):231A. 1 January 2009.

Pinar, Halit, Hakan Boya, Ismail Satoglu and Haluk Oztekin. "A Contribution to Pisan's Sign for Diagnosing Lateral Meniscal Cysts: A Technical Report." Knee Surgery, Sports Trauma, Arthoscopy. 17(4):403-404. May 2009.

Pinar, Halit, Marshall Carpenter, Benjamin J. Martin and Umadevi Tantravahi. "Utility of Fetal Karyotype in the Evaluation of Phenotypically Abnormal Stillbirths." Pediatrics and Developmental Pathology. 12(3):217-212. May-June. 2009.

Politch, Joseph, Kenneth Mayer and Deborah Anderson. "Depletion of CD4 T Cells in Semen During HIV Infection and Their Restoration Following Antiretroviral Therapy." Journal of Acquired Immune Deficiency Syndromes. 50(3):283-289. March 2009.

Quddus, M. Ruhul.  SEE also: Manna, P.; Ologun, B. A.; Peng, S. L.; Zhang, C.

Quddus, M. Ruhul, Laniota Rashid, C. James Sung, Margaret M. Steinhoff, Cunxian Zhang and W. Dwayne Lawrence. "Ewing's Sarcoma/Peripheral Primitive Neuroectodermal Tumor (ES/PNET) Differentiation in Endometrial Serous Carcinomas." Reproductive Sciences. 16(6):591-595. June 2009.

Quddus, M. R., L. Rashid, K. Hansen, C. J. Sung and W. D. Lawrence. "High-Grade Serous Carcinoma Arising in a Low-Grade Serous Carcinoma and Micropapillary Serous Borderline Tumor of the Ovary in a 23-Year-Old Woman." Histopathology. 54(6):771-773. May 2009.

Quddus, M. R., P. Manna, C. J. Sung, S. Kerley, M. M. Steinhoff and W. D. Lawrence. "Simultaneous Detection, Typing and Quantification of All 15 High Risk HPV Types in Adeno-Squamous Carcinoma of the Uterine Cervix-A Real Time PCR Based Study (Abstract)." Modern Pathology. 22(Suppl.1):233A. January 2009.

Rego, Meghan A., Frederick W. Kolling IV and Niall G. Howlett. "The Fanconni Anemia Protein Interaction Network: Casting a Wide Net." Mutation Research. 668(1-2):27-41. July 31,  2009.

Reisner, Sari L., Matthew J. Mimiaga, Margie Skeer and Kenneth H. Mayer. "Beyond Anal Sex: Sexual Practices Associated With HIV Risk Reduction Among Men Who Have Sex With Men in Boston, Massachusetts." AIDS Patient Care and STDs. 23(7):545-550. 2009.

Reisner, S. L., M. J. Mimiaga, M. Skeer, D. Bright, K. Cranston, D. Isenberg, S. Bland, T. A. Barker and K. H. Mayer. "Clinically Significant Depressive Symptoms as a Risk Factor for HIV Infection Among Black MSM in Massachusetts." AIDS and Behavior. 13(4):798-810. August 2009.

Reisner, S. L., M. J. Mimiaga, S. Bland, K. H. Mayer, B. Perkovich and S. A. Safren. "HIV Risk and Social Networks Among Male-to-Female Transgender Sex Workers in Boston, Massachusetts." JANAC-Journal of the Association of Nurses in AIDS Care. 20(5):373-386. September -October 2009.

Reisner, Sari L., Matthew J. Mimiaga, Margie Skeer and Kenneth H. Mayer. "HIV Risk Reduction Among Men Who Have Sex With Men in Boston Massachusetts." AIDS Patient Care & STDs. 23(7):545-550. July 2009.

Reisner, Sari L., Matthew J. Mimiaga, Patricia Case, Carey V. Johnson, Steven A. Safren and Kenneth H. Mayer. "Predictors of Identifying as a Barebacker Among High-Risk New England HIV Seronegative Men Who Have Sex With Men." Journal of Urban Health. 86(2):250-262. March 2009.

Remien, Robert H., Jenny A. Higgins, Wayne T. Steward, David W. Seal, Kathleen J. Sikkema, Peter R. Kerndt, Kenneth H. Mayer, Hong-Ha M. Truong, Corinna Young Casey, Anke A. Ehrhardt and Stephen F. Morin. "Lack of Understanding of Acute HIV Infection Among Newly-Infected Persons--Implications for Prevention and Public Health: The NIMH  Multisite Acute HIV Infection Study: II." AIDS and Behavior. 13(6):1046-1053. 2009.

Rhodes, Ryan G., Wendy Coy and David R. Nelson. "Chitobiose Utilization in Borrrelia burgdorferi Is Dually Regulated by RpoD and RpuS." BMC Microbiology. 9:#108. May 27,  2009.

Safren, Steven A., Conall O'Cleirigh, Judy Y. Tan, Sudha R. Raminani, Laura C. Reilly, Michael W. Otto and Kenneth H. Mayer. "A Randomized Controlled Trial of Cognitive Behavioral Therapy for Adherence and Depression (CBT-AD) in HIV-Infected Individuals." Health Psychology. 28(1):1-9. 2009.

Salomon, Elizabeth A., Matthew J. Mimiaga, Marian J. Husnick, Seth L. Welles, Marc W. Manseau, Arnel B. Montenegro, Stefen A. Safran, Beryl A. Koblin, Margaret A. Chesney and Kenneth H. Mayer. "Depressive Symptoms, Utilization of Mental Health Care, Substance Use and Sexual Risk Among Young Men Who Have Sex With Men in EXPLORE: Implications for Age Specific Interventions." AIDS and Behavior. 13(4):811-821. August 2009.

Saravanan, S., M. Vidya, P. Balakrishnan, N. Kumarasamy, Sunil S. Solomon, S. Solomon, Rami Kantor, David Katzenstein, Bhatrat Ramrat and Kenneth H. Mayer. "Evaluation of Two Human Immunodeficiency Virus-1 Genotyping Systems: Viro-Seq  2.0 and an In-House Method." Journal of Virological Methods. 159(2):211-216. August 2009.

Schneider, J. A., A. Dude, M. Dinaker, V. Kumar, E. O. Laumann, A. Halloway-Beth, G. Oruganti, G. S. Saluja, V. Chundi, V. Yeldani and K. H. Mayer. "General Hygiene, Sexual Risk Behaviour and HIV Prevalence in Truck Drivers From Andhra Pradesh, South India: Implications for Prevention Interventions." International Journal of STD & AIDS. 20(1):39-45. January 2009.

Simon, R. A., S. L. Peng, C. J. Sung, W. D. Lawrence and C. Zhang. "Glandular Intraluminar Debris in Endometrioid Adenocarcinoma of the Endometrium Correlates With Tumor Grade and Stage: A Clinipathologic Study of 115 Cases (Abstract)." Modern Pathology. 22(Suppl.1):237A. 1 January 2009.

Slonim, Donna K., Keiko Koide, Kirbby L. Johsnon, Umadevi Tantravahi, Janet M. Cowan, Zina Jarrah and Diane W. Bianchi. "Functional Genomic Analysis of Amniotic Fluid Cell-Free MRNA Suggests That Oxidative Stress Is Significant in Down Syndrome Fetuses." Proceedings of the National Academy of Sciences of the United States. 106(23):9425-9429. June 9, 2009.

Solomon, Suniti, Ashita Batavia, Karti K. Venkatesh, Lisanne Brown, Praneeta Verma, Amitha J. Cecelia, Celine Daly, Vaishali S. Mahendra, N. Kumarasamy and Kenneth H. Mayers. "Longitudinal Quality-of-Life Study of HIV-Infected Persons in South India: The Case for Comprehensive Clinical Care and Support Services." AIDS Education and Prevention. 21(2):104-114. April 2009.

Sperry, Jay F.  SEE: Tamminedi, K.

Steinhoff, Margaret M.  SEE: Quddus, M. Ruhul;  Zhang, C.

Subbaraman, R., B. Devaleenal, P. Selvamuthi, T. Yepthomi, S. S. Solomon, K. H. Mayer and N. Kumarsamy. "Factors Associated With Anemia in HIV-Infected Individuals in Southern India." International Journal of STD & AIDS. 20(7):489-492. July 2009.

Sun, Gongqin.  SEE also Ahmadbeni, Yousef; Huang, Kezhan; Kemble, David J.; Lin, X.; Tiwari, R.; Ye, Guofeng.

Sun, Gongqin and David J. Kemble. "To C or Not to C: Direct and Indirect Redox Regulation of Src Perotein Tyrosine Kinase." Cell Cycle. 8(15):2353-2355. August 8, 2009.

Sung, C. James.   SEE: Luu, M. H. T.; Ologun, B. A.; Peng, S. L.;  Quddus, M. Ruhul; Simon, R. A.; Zhang, C.

Szumouski, John D., Kenneth M. Wener, Howard S. Gold, Michael Wong, Lata Venkataraman, Carrie A. Runde, Daniel E. Cohen, Kenneth H. Mayer and Sharon B. Wright. "Methicillan-Resistant Staphylocooccus aureos Colonization, Behavioral Risk Factors, and Skin and Soft-Tissue Infection at an Ambulatory Clinic Serving a Large Population of HIV-Infected Men Who Have Sex With Men." Clinical Infectious Diseases. 49(1):118-121. July 1, 2009.

Tamminedi, K., B. Chaudhary, J. Sperry, R. LaCroix and L. Martin. "Novel Pleurocidin-AMP Analogs and Bioassays (Abstract)." Biopolymers. 92(4):315. 2009.

Tavtravahi, Umadevi.  SEE: Abellar, Roseanna G.; Pinar, Halit; Slonim, Diana K.

Taylor, Lynn E. and Kenneth H. Mayer. "Acute Hepatitis C Virus Infection in an HIV Clinic and in Community Settings." Gastroenterology. 136(7):2411-2412. June 2009.

Thomas, Beena, Matthew J. Mimiaga, Kenneth H. Mayer, Carey V. Johnson, Sunil Menon, V. Chsandraskaran, P. Murugesan, Soumya Swaminathan and Steven A. Safren. "HIV Prevention Interventions in Chennai, India: Are Men Who Have Sex With Men Being Reached?" AIDS Patient Care and STDS. 23(11):981-986. 2009.

Thomas, Beena, Matthew J. Mimiaga, Sunil Menon, V. Chandrasekaran, P. Murugeson, Soumya Swarnninathan and Kenneth H. Mayer. "Unseen and Unheard: Predictors of Sexual Risk Behavior and HIV Infection Among Men Who Have Sex With Men in Chennai, India." AIDS Education and Prevention. 21(4):372-383. August 2009.

Tidswell, Mark, William Tillis, Steven P. Larosa, Melvyn Lyy, Alec E. Wittek, Richard Kao, Janice Wheeler, Jagadish Gogate and Steven M. Opal. "Phase 2 Trial of Eritoran Tetrasodium (E5564), a Toll-Like Receptor 4 Antagonist, in Patients With Severe Sepsis." Critical Care Medicine. 24(1):72-83. 2010.

Tiwari, R., X. F. Guo, Y. H. Wang, S. Narramaneni, K. Parang and G. Q. Sun. "Development of a Potent and Specific Ligand for the Src SH3 Domain (Abstract)." Abstracts of Papers of the American Chemical Society. 236:MEDI 367. August 17, 2009.

Tounkara, K., B. Aboubacar, O. Koita, S. Dao, S. Moussa, D. Ibrahima, S. Fanta, F. Bougoudogo, R. Gerber and A. S. De Groot. "Knowledge, Attitudes, Practices and willingness to participate in HIV Vaccine Trials Among Urban Residents of Bamako, Mali, West Africa, 2005-2009 (Poster Presentation)." Retrovirology.

Vignesh, Ramachandran, Esaki M. Shankar, Muthu Nagalingeswaran Kumarasamy, Paulas Irene, Kallapuri G. Murugavel, Kenneth H. Mayer, Suniti Solomon and Pachamuthu Batakrishnan. "Predominance of Methicillin-Resistant Stapholocococcus aureos Among HIV Positive Subjects With Pytexia of Unknown Origin in Chennai, Southern India (Letter)." Journal of Infection. 58(4):313-314. April 2009.

Vora, N. L., K. L. Johnson, H. Tighouart, I. Peter, A. C. Urato, J. A. Canick, G. Lambert-Messerlian and D,. W, Bianchi. "Relationships Between Cell Free DNA and Maternal Serum Marker Levels in the First and Second Trimesters of Pregnancy." Reproductive Sciences. 16(3):143A. Suppl.S. March 2009.

Weber, Constanze A., Preema J. Mehta, Matt Ardito, Lenny Moise, Bill Martin and Anne S. De Groot. "T Cell Epitope: Friend or Foe? Immunogenicity of Biologies in Context." Advanced Drug Delivery Reviews. 61(11):965-076. September 20, 2009.

Ye, Guofeng, Aaron D. Schuler, Yousef Ahmadbeni, Joel R. Morgan, Absar Faruqui, Kezhen Huang, Gongqin Sun, John A. Zebala and Keykavous Parang. "Synthesis and Evaluation of Phoseophopeptides Containing Iminodiacetate Groups as Binding Ligands of the Src SH2 Domain." Bioorganic Chemistry. 37(4):133-142. August 2009.

Zhang, C., Y. E. Wang, F. Liu, M. M. Steinhoff, M. R. Quddus, J. Kasznica and C. J. Sung. "Routine Histologic Parameters Can Predict the Presence of Breast Carcinoma Following a Core Biopsy Showing Atypical Ductal Hyperplasia: A Clinicopathologic Study of 124 Cases  (Abstract)." Modern Pathology. 22(Suppl.1):76A. January 2009.


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