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Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2011

ENVIRONMENT & LIFE SCIENCES
Cell & Molecular Biology

Anderson, Kathryn B., Robert V. Gibbons, Stephen J. Thomas, Alan L. Rothman, Ananda Nisalak, Ruth L. Berkelman, Daniel H. Libraty and Timothy P. Endy. "Preexisting Japanese Encephalitis Virus Neutralizing Antibiodies and Increased Symptomatic Dengue Illness in a School-Based Cohort in Thailand." PLoS Neglected Tropical Diseases. 5(10):e1311. October 2011.

Ardito, Matthew, Joanna Fueyo, Ryan Tassone, Frances Terry, Kristen DaSilva, Songhue Zhang, William Martin, Anne S. De Groot, Steven F. Moss and Leonard Moise. "An Integrated Genomic and Immunoinformatic Approach to H. pylori Vaccine Design." Immunome Research. 7(2):#1. 2011.

Artenstein, A. W. and S. M. Opal. "Proprotein Convertases in Health and Disease." New England Journal of Medicine. 365(26):2507-2518. December 29, 2011.

Balakrishnan, P., H. S. Iqbal, S. Shanmuzham, J. Mohanakrishnan, S. S. Solomon, K. H. Mayer, and S. Solomon. "Low-Cost Assays for Monitoring HIV Infected Individuals in Resource-Limited Settings." Indian Journal of Medical Research. 134(6):823-834. December 2011.

Blackard, Jason T., Jeffrey A. Welge, Lynn E. Taylor, Kenneth H. Mayer, Robert S. Klein, David D. Celentano, Denise J. Jamieson, Lytt Gardner and Kenneth E. Sherman. "HIV Mono-Infection Is Associated With FIB-4-A Noninvasive Index of Liver Fibrosis - in Women." Clinical Infectious Diseases. 52(5):674-680. March 1, 2011..

Blashill, Aron J., Connall O'Cleirigh, Steven A. Safren and Kenneth H.  Mayer. "The Moderating Role of BMI on the Relationship Between Depression and Transmission Risk Behaviors Among HIV-Infected Men (Abstract)." Annals of Behavioral Medicine. 41:Suppl.1):S94. 1 April 2011.

Chen, Judy Ying, Qiufei Ma, Francois Everhard, Irina Yermilov, Haijen Tian and Kenneth Hugh  Mayer. "HIV Screening in Commercially Insured Patients Screened or Diagnosed With Sexually Transmitted Diseases or Blood-Borne Pathogens." Sexually Transmitted Diseases. 38(6):522-527. June 2011.

Christaki, E., P. Anyfanti and S. M. Opal. "Immunomodulatory Therapy for Sepsis: An Update." Expert Review of Anti-Infective Therapy. 9(11):1013-1033. November 2011.

Christaki, Eirini, Steven M. Opal, James C. Keith, Jr., Nubar Kessimian, John E. Palardy, Nicolas A. Parejo, Xiang Yang Tan, Nicole Pitcher-Nicholas, Lioudmila Tchisitakova, George P. Vlasuk, Kathleen Shields, Jeffrey L. Feldman, Edward R. Lavallie, Maya Arai, William Mounts and Debra D. Pittman. "A Monoclonal Antibody Against RAGE Altersgene Expression and Is Protective in Experimental Models of Sepsis and Pneumococcal Pneumonia." Shock. 35(5):492-498. May 2011.

Cohen, Myron S., Ying Q. Chen, Marybeth McCauley, Theresa Gamble, Mina C. Hosseinipour, Nagalingeswaran Kumarasamy, James H. Hakim, Johnstone Kumwenda, Beatriz Grinsztein, Jose H. S. Pilotto, Sheela V. Godbole, Sanjay Chariyalertsak, Breno R. Santos, Kenneth H. Mayer, Irving F. Hoffman, Susan H. Eshleman, Estelle Piwowar-Manning, Lei Wang and Joseph Makhema. "Prevention of HIV-1 Infection With Early Anitviral Therapy." New England Journal of Medicine. 365(6):493-505. August 11, 2011.

Cohen, Paul S.  SEE: Fabich, Andrew J.; Jones, Sheri A.

Cybulsaki, Kelly E. and Niall G. Howlett. "FANCP/SLX4: A Swiss Army Knife of DNA Interstrand Crosslink Repair." Cell Cycle. 10(11):1757-1763. June 1, 2011.

DeGroot, Anne S.  SEE also: Ardito, Matthew; Elyaman, E.; Levitz, L.; Martin, William; Messitt, Timothy J.; Moise, Leonard; Moss, Steven F.; Sangara, K.; Schanen, Brian C.;  Wierda, D.

DeGroot, Anne S., Editorial Board. Human Vaccines. Vol.7, 2011.

de Groot, Anne, Section Editor. Immunome Research. Vol.7, 2011.

De Groot, Anne S., Matthew Ardito, Leonard Moise, Eric A. Gustafson, Denise Spero, Gloria Tejada and William Martin. "Immunogegnic Concensus Sequence T Helper Epitopes for a Pan-Burkholderia Biodefense Vaccine." Immunome Research. 7(2):37. 2011.

De Groot, Annie. "Liberating Libya (Letter)." Providence Journal. August 25, 2011.  p.B7.S

De Groot, Anne S. Thinking Out Loud.  (Blog on Immunogenicity, Biotherapeutics and Vaccines). http://www.epuivax.com/blog

De Groot, Anne S., Matthew Ardito, Ryan Tassone, Paul Knopf, Leonard Moisse and William Martin. "Tools for Vaccine Design: Prediction and Validation of Highly Immunogenic and Conserved Class II Epitopes and Development of Epitope-Driven Vaccines."  IN: Development of Vaccines: From Discovery to Clinical Testing. 2011.  p.65-94.

De Groot, A. S., N. Najafian, D. J. Hu, F. Mingozzi, L. P. Cousens, L. Moise, S. J. Khoury, W. Elyaman, W. Martin and D. W. Scott. "Tregitopes and Tolerance: Harnessing Regulatory T Cells to Suppress Inflammation (Abstract)." Inflammation Research. 60(Suppl.1):35-36. June 2011.

Delsesto, D. and S. M. Opal. "Future Perspectives on Regulating Pro- and Anti-Inflammatory Responses in Sepsis." Contributions to Microbiology. 17:137-156. 2011.

Detels, Roger, Annette M., Jeffrey D. Klausner, David Katzenstein, Charlotte Gaydos, H. Hunter Handsfeld, M. Willo Pequegnat, Kenneth Mayer, Tyler D. Hartwell and Thoomas C. Quinn. "The Incidence and Correlates of Symptomatic and Asympomatic Cliamydia trachomatis and Neisseria gonorrheae Infections in Selected Populations in Five Countries." Sexually Transmitted Diseases. 38(6):503-509. June  2011.

Dundas, Nicola E., Mandolin S. Ziadie, aula. A. Revell, Evangeline Brock, Midori Mitui, N. Kristine Leos and Beverly B. Rogers. "A Lean laboratory: Operational Simplicity and Cost Effectiveness of the Luminex xTAG (tm) Respiratory Viral Panel." Journal of Molecular Diagnostics. 13(2):175-179. March 2011.

Elyaman, W., S. J. Khoury, D. W. Scott and A. S. De Groot. "Potential Application of Tregitopes as Immunomodulating Agents in Multiple Sclerosis." Neurological Research International. 2011.

Endy, Timothy P., Katherine B. Anderson, Ananda Nisalak, In-Kyu Yoon, Sharone Green, Alan L. Rothman, Stephen J. Thomas, Richard G. Jarman, Daniel H. Libraty and Robert V. Gibbons. "Determinants of Inapparent and Symptomatic Dengue Infection in a Prospective Study of Primary School Children in Kamphaeng Phet, Thailand." PLoS Neglected Tropical Diseases. 5(3):e975. March 1, 2011.

Eshelman, Susan H., S.ara E. Hudelson, Andrew D. Redd, Lei Wang, Rachel Debes, Ying Q. Chen, Craig A. Martens, Stacey M. Ricklefs, Ethan J. Selig, Stephen F. Porcella, Supriya Munshaw, Stuart C. Ray, Estelle Piwowar-Manning, Marybeth McCauley, Mina C. Hosseinpour, Johnston Kumwenda, Jane G. Hakim, Suwat Chariyalelrtsak, Guy de Bruyn, Beatriz Grinsztejn, Nagalingeswaran Kumarasamy, Joseph Makhema, Kenneth H. Mayer, Jose Pilotto, Breno R. Santos, Thomas C. Quinn, Myron S. Cohen and James P. Hughes. "Analysis of Genetic Linkage of HIV From Couples Enrolled in the HIV Prevention Trials Network 052 Trial." Journal of Infectious Diseases. 204(12):1918-1926. December 2011.

Fabich, Andrew J., Mary P. Leatham, Joe E. Grissom, Graham Wiley, Hongshing Lai, Fares Najar, Bruce A. Roe, Paul S. Cohen and Tyrrell Conway. "Genotype and Phenotypes of an Intestine-Adapted Eschericha  Coli K-12 Mutant Selected by Animal Passage for Superior Colonization." Infection and Immunity. 79(6):2430-2439. June 2011.

Friberg, Heather, Hema Bashyam, Tomoka Toyosaki-Maeda, James A. Potts, Thomas Greenough, Siripen Kalayanarooj, Robert V. Gibbons, Anandq Nisalak, Anon Srikiatkhachorn, Sharone Green, Henry A. F. Stephens, Alan R. Rothman, and Anuja Mathew. "Cross-Reactivity and Expansion of Dengue-Specific T Cells During Acute Primary and Secondary Infections in Humans." Scientific Reports. 1:#51. 2011.  9p.

Friberg, Heather. Lynne Burns, Marcia Woda, Siripen Kalayanarooj, Timothy P. Endy, Harry A.F. Stephens, Shane Green, Alan L. Rothman and Anuja Mathew. "Memory CD8+ T Cells From Naturally Acquired Primary Dengue Virus Infection Are Highly Cross-Reactive." Immunology and Cell Biology. 89(1):122-129. January 2011.

Goldhammer, Hilary and Kenneth H. Mayer. "Focusing on Sexual Health Promotion to Enhance Preventive Behaviors Among Gay Men and Other Men Who Have Sex With Men: Report From a State-of-the-Art Conference." AIDS and Behavior. 15(S1):1-8. 2011.

Gomez-Chiarri, M. and David R. Nelson. Delivery of DNA Vaccines Into Fish by Immersion US Patent7871629. January 18, 2011.

Grant, Robert M., Kenneth H. Mayer and David V. Glidden. "Preexposure Chemoprophylaxis for HIV Prevention; Reply." New England Journal of  Medicine. 364(14):1374-1375. April 7, 2011.

Hatch, Steven, Tim P. Endy, Stephen Thomas, Anuja Mathew, James Potts, Pamela Pazoles, Daniel H. Libraty, Robert Gibbons and Alan L. Rothman. "Intracellular Cytokine Production by Dengue Virus-Specific T Cells Correlates With Subclinical Secondary Infection." Journal of Infectious Diseases. 203(9):1282-1291. May 1, 2011.

Hatzenbuehler, M. L., C. O'Clerigh, K. H. Mayer, M. J. Mimiaga and S. A. Safren. "Prospective Associations Between HIV-Related Stigma, Transmission Risk Behaviors, and Adverse Mental Health Outcomes in Men Who Have Sex With Men." Annals of Behavioral Medicine. 42(2):227-234. October 2011.

Hemmige, Vagish, Hannah Snyder, Chuanhong Liao, Kenneth Mayer, Vemu Lakshmi, Sabitha R. Gandham, Ganesh Orunganti and John Schneider. "Sex Position, Marital Status, and HIV Risk AMong Indian Men Who Have Sex With Men: Clues to Optimizing Prevention Approaches." AIDS Patient Care and  STDS. 25(12):725-734. December 2011.

Hendrickson, E. S., A. K. Krishnan, S. Vallabhaneni, S. Johnson, S. Raminani, N. Kumarasamy, S. Solomon, K. H. Mayer and S. S. Safren. "Primary Prevention Lessons Learned From Those With HIV in Chennai, India." Sex Health. 8(2):199-206. June 2011.

Hoots, Brooke E., Michaal G. Hudgens, Stephen R. Cole, Caroline C. King, Robert S. Klein, Kenneth H. Mayer, Anne M. Rompalo, Jack D. Sobol, Denise J. Jamieson and Jennifer S. Smith. "Lack of Association of Herpes Simplex Virus Type 2 Seropositivity With the Progression of HIV Infection in the HERS Cohort." American Journal of Epidemiology. 173(7):837-844. 1 April 2011.

Hopley, Richard, Amy Sigman, Kenneth Carr, Jennifer Roberts and Beverly Rogers. "Managing QC and Compliance With POCT Management." MLO Medical Laboratory Observations. 43(7):26,28, July 2011.

Howlett, Niall G.  SEE: Cybulski, Kelly E.; Rego, M. A.

Johnson, Carey V., Matthew J. Mimiaga, Sari L. Reisner, Rodney Vanderwarker and Kenneth H. Mayer. "Barriers and Facilitators to Routine HIV Testing: Perceptions From Massachusetts Community Health Center Personnel." AIDS Patient Care and STDS. 25(11):647-655. November 2011.

Jones, Shari A., Terri Gibson, Rosali C. Maltby, Fatemeh Z. Choudhury, Valley Stewart, Paul S. Cohen and Tyrrell Conway. "Anaerobic Respiration of Escherichia coli in the Mouse Intestine." Infection and Immunity. 79(1):4218-4226. October 2011.

Kalil, A. C., S. P. Larosa, M. Lynn, S. M. Opal and the  Eritorn Sepsis Study Group. "Influence of Severity of Illness on the Effects of Eritaran Tetrasodium (E5564) and on Other Therapies for Severe Sepsis." Shock. 36(4):327-356. June 9, 2011.

Kaplan, Gary B.  SEE also: Tidey, Jennifer.

Kaplan, Gary B., Kimberly A. Leite-Morris, Wen Ying Fan, Angela J. Young and Marsha D. Goy. "Opiate Sensitization Induces FosB/Delta FosB Expression in Prefrontal Cortical, Striated and Amygdala Brain Regions." PLoS One. 6(8):e23574. August 23, 2011.

Kaplan, Gary B., Stephen C. Heinrichs and Robert J. Carey. "Treatment of Addiction and Anxiety Using Extinction Approaches: Neural Mechanisms and Their Treatment Implications." Pharmacology, Biochemistry & Behavior. 97(3):619-625. January 2011.

Kaplan, Gary B. and Katherine A. Moore. "The Use of Cognitive Enhancers in Animal Models of Fear Extinction." Pharmacology, Biochemistry & Behavior. 99(2):217-228. August 2011.

Kausch, Albert and  Nelson Vasilchik. The Book of Fighting.  Watch Hill Press. 2011.

Kausch, Albert and Richard Rhodes. Genetic Improvement of Switchgrass, Biomass; Providing New Advanced Berreding Capabilities, Inmproved Energy Crop Varieties, Genomics and Transgenics for the Growing Biofuels Industry. 2011 DOE Feedstock Program. (DE-FG-36-08G)88070) 2011.

Kausch, Albert and Stephen Dellaporta. Male and Female Sterility Lines Used to Make Hybrids in Genetically Modified Plants. PCT Int.Appl. WO 2011090752 A1 20110728.

Kelly, Colleen F., Richard E. Haaland, Pragna Patel, Tammy Evans-Strickfaden, Carol Farshy, Debra Hanson, Kenneth Mayer, Jeffrey L. Lennox, John T. Brooks and Clyde E. Hart. "HIV-1 RNA Rectal Shedding Is Reduced in Men With Low Plasma HIV-1 RNA Viral Loads and Is Not Enhanced by Sexually Transmitted Bacterial Infections of the Rectum." Journal of Infectious Diseases. 204(5):761-767. September 1, 2011.

Kerby, Matthew B., Aartik A. Saron, Madhukar S. Patel, Andrew W. Artenstein, Steven M. Opal and Anubhau Tripathi. "Early In Vitro Transcription Termination in Human H5 Influenza Viral RNA Synthesis." Applied Biochemistry and Biotechnology. 164(4):497-513. June 2011.

Khokhar, S. K., M. Mitui, N. K. Leos, B. B. Rogers and J. Y. Park. "Evaluation of Mazwell (R) 16 for Automated DNA Extraction From Whole Blood and Formalin-Fixed Paraffin Embedded (FFPE) Tissue." Clinical Chemistry Laboratory Medicine. 2011.

Koide, Keiko, Donna Kirby Slonim, K. L. Johnson, Umadevi Tantravahi, Janet M. Cowan and Diana W. Bianchi. "Transcriptonic Analysis of Cell-Free Fetal RNA Suggests a Specific Molecular Phenotype in Trisomx 18." Human Genetics. 129(3):295-305. 2011.

Krakower, D. and K. H. Mayer. "Promising Prevention Approaches: Tenofir Gel and Prophylactic Use of Antiretroviral Medications." Current HIV/AIDS Reports. 8(4):241-248. December 2011.

Kumarasamy, N., Kartik Venkatesh, Bella Devaleenal, S, Poongulali, Tokugha Yepthomi, Suniti Solomon, Timothy Flanigan and Kenneth H. Mayer. "Safety, Tolerability, and Efficacy of Second-Line Generic Protease Inhibitor Containing HAART After First-Line Failure Among South Indian HIV-Infected Patients." Journal of the International Association of Physicians in AIDS Care. 10(2):71-75. 2011.

LaCroix, R., K. Tammined, D. E. Rydera, J. F. Sperry and L. M. Martin. "Bioassays of Analyses of Pleurocidin-Amide Indicated That Change at N-terminus Is Key to Improved Efficiency (Abstract)." Biopolymers. 96(4):#79. 2011.

LaRosa, Steven P. and Steven M. Opal. "Biomarkers: The Future." Critical Care Clinics. 27(2):407-419. April 2011.

Lazaryan, Aliksandr, Wei Song, Elena Lobashevsky, Jiamming Tang, Sadeep Shrestha, Kui Zhang, James M. McNicholl, Lytt I. Gardner, Craig M. Wilson, Robert S. Klein, Anne Rompalo, Kenneth Mayer, Jack Sobol, Richard A. Kaslow, for the HIV Epidemiology Research Study Group and Reaching for Excellence in Adolescent Care and Health Study Group. "The Influence of Human Leukocyte Antigen Class I Alleles and Their Population Frequencies on Human Immunodeficiency Virus Type 1 Control Among African Americans." Human Immunology. 72(4):312-318. April 2011.

Levitz, L., K. Sangare, K. Tourkara, F. Siby Diallo, S. Traore, Y. Kone, O. Koita, J. Rozehnal, Z. Koty, M. Rochas and A. De Groot. "Providing Care and Education Prior to Engaging in an HIV Vaccine Trial, Bamako Mali, West Africa (Abstract)." AIDS Research and Human Retroviruses. 27(10):A56. 2011.

Li, Ling, Xiangyu Mou and David R. Nelson. "HlyU Is a Positive Regulator of Hemolysin Expression in Vibrio aguillarum." 193(18):4779-4789. September  Journal of Bacteriology. 193(18):4779-4789. 2011.

Liao, Qing and Paul Vouros. "Olignucleotide Addicts as Biomarkers for DNA Damage Analysis by Mass Spectrometry Coupled to Separation  Methods." Advances in Chromatography. 49:195-256. 2011.

Liu, Albert Y., Eric Vittinghoff, Deborah E. Sellmeyer, Risha Irvin, Kathleen Mulligan, Kenneth Mayer, Melanie Thompson, Robert Grant, Sonal Pathak, Brandon O'Hara, R. Gvetadze, Kata Chillag, Lisa Grohskopf and Susan P. Buchbinder. "Bone Mineral Density in HIV-Negative Men Participating in a Tenofir Pre-Exposure Prophylaxis Randomized Clinical Trial in San Francisco." PLoS One. 6(8):e23688. August 29, 2011.

Lomme, Michele, Stefan Kostadinov and Cunxian Zhang. "Large Solitary Luteinized Follicle Cyst of Pregnancy and Puerperium: Report of Two Cases." Diagnostic Pathology. 6:#3. January 10, 2011.  4p.

Martin, Lenore M.  SEE also: LaCroix, R.

Martin, Lenore M., Editorial Board. Journal of Computational Biology and Bioinformatics Research. 2012.

Martin, William, Matt Ardito, Ryan Tassoner, Joe Desrosiers, Paul Knopf, Leonard Moise and Anne S. De Groot. "Tools for Vaccine Design: Prediction and Validation of Highly Immuniogenic and Conserved Class II Epitopes and Development of Epitope-Driven Vaccines."  IN: Development of Vaccines: From Discovery to Clinical Testing, Edited by Indrish Srivastava and Manmohan Singh. Wiley. 2011.

Massingham, Lauren J., Kirby Johnson, Diana W. Bianchi, Sherman Pei, Inga Peter, Janet M. Cowan, Umadevi Tantravahi and Tom P. Morrison. "Proof of Concept Study to Assess Fetal Gene Expression in Amniotic Fluid by Nano-Array PCR." Journal of Molecular Diagnostics. 13(5):565-570. 2011.

Mathew, Anuja, Kim West, Siripen Kalayanarooj, Robert V. Gibbons, Anon Srikiatkhachorn, Sharone Green, Daniel Libraty, Samita Jaiswal and Alan L. Rothman. "B-Cell Responses During Primary and Secondary Dengue Virus Infections in Humans." Journal of Infectious Diseases. 204(10):1514-1522. 15 November 2011.

Mayer, Kenneth H.  SEE also: Balakrishnan, P.; Blackard, Jason T.; Blashill, A. J.; Chen, Judy Ying; Cohen, Myron S.; Detels, Roger; Eshelman, Susan H.; Goldhammer, Hilary; Grant, Robert M.;  Hatzenbuehler, M. L.; Hemmige, V.; Hendriksen, E. S..; Hoots, Brooke E.; Johnson, Carey V.; Kelley, Colleen F.; Krakower, D.;  Kumarasamy, N.; Lazaryan, A.; Liu, A. Y.;  Merchant, R. C;  Mimiaga, Matthew J.; Myers, Gavin M.; Nunn, Amy; Rosenberger, Joshua G.; Safran, Steven A.;  Saravanan, S.; Schoenfisch, A. L.; Sivasubramanian, Murugesan; Taylor, Lynn E.; Thomas, B.; Venkatesh, K. K.

Mayer, Kenneth H. "Antiretrovirals for HIV Prevention: Translating Promise Into Praxis." Lancet. 378(9787):206-208. July 16, 2011.

Mayer, Kenneth H. "Focusing on Sexual Health Promotion to Enhance Preventive Behaviors Among Gay Men and Other Men Who Have Sex With Men: Report From a State-of-the-Art Conference." AIDS and Behavior. 12(Suppl.1):1-8. 2011.

Mayer, Kenneth H. and Kartik K. Venkatesh. "Interactions of HIV, Other Sexually Transmitted Diseases, and Genital Tract Inflammation Facilitating Local Pathogen Transmission and Acquisition." American Journal of Reproductive Immunology. 65(3):308-316. 2011.

Mayer, Kenneth H., Jeffrey D. Klausner and Hunter Handsfield. "Intersecting Epidermics and Educable Moments: Sexually Transmitted Disease Assessment and Screening in Men Who Have Sex With Men." Sexually Transmitted Diseases. 28(8):464-467. August 2011.

Mayer, Kenneth Hugh. "Introduction: Linkage, Engagement, and Retention in HIV Care: Essential for Optimal Individual- and Community-Level Outcomes in the Era of Highly Active Antiretroviral Therapy." Clinical Infectious Diseases. 52(Suppl.2):S205-S207. January 15, 2011.

Mayer, Kenneth H. "Past as Prologue: The Refractory and Evolving HIV Epidemic Among Men Who Have Sex With Men (Editorial Commentary)." Clinical Infectious Diseases. 52(11):1371-1373. June 1, 2011.

Mayer, Kenneth H. "Preserving Human Rights in the Era of "Test and Treat" for HIV Prevention (Letter)." American Journal of Public Health. 101(2):199-200. 5 February 2011.

Mayer, Kenneth H., M. J. Mimiaga, M. Gelman and C. Grasso. "Raltegravir, Tenofovir DF, and Entricitabine for Postexposure Prophylaxis to Prevent the Sexual Transmission of HIV: Safety, Tolerability, and Adherence." Journal of Acquired Immune Deficiency Syndromes. 59(4):54-549. April 2011.

Mayer, Kenneth H. and Matthew J. Mimiaga. "Resurgent Syphilis in the United States: Urgent Need to Address and Evolving Epidemic (Editorial)." Annals of Internal Medicine. 155(3):192-W.64. August 2, 2011.

Mayer, Kenneth H. "Sexually Transmitted Diseases in Men Who Have Sex With Men." Clinical Infectious Diseases. 53(Suppl.3):S79-S83. 2011.

Merchant, Roland C., Melissa A. Clark, Thomas J. Langdan IV, Kenneth H. Mayer, George R. Seage III and Victor G. Degruttola. "Can Computer-Based Feedback Improve Emergency Department Patient Uptake of Rapid HIV Screening?" Annals of Emergency Medicine. 58(1 Suppl):S114-S119. July 2011.

Messitt, Timothy J., Frances Terry, Leonard Moise, William Martin and Anne S. De Groot. "Comparison of Two Methods for T Cell Epitope Mapping: 'Cell-Free' in Vitro Versus Immunoinformatics." Immunome Research. 7(2):6. 2011.

Mimiaga, M. J., B. Thomas, K. H. Mayer, S. L. Reisner, S. Menon, S. Swaminathan, M. Periyamsy, C. V. Johnson and S. A. Safren. "Alcohol Use and HIV Risk Among MSM in Chennai, India." International Journal of STD & AIDS. 22(3):121-125. March 2011.

Mimiaga, Matthew J., Carey V. Johnson, Sari L. Reisner, Rodney VanDerwarker and Kenneth H. Mayer. "Barriers to Routine HIV Testing Among Massachusetts Community Health Center Personnel." Public Health Report. 126(5):643-652. September/October 2011.

Mimiaga, Matthew J., Sari L. Reisner, Sean E. Bland, Maura D. Driscoll and Kenneth H. Mayer. "Sex Parties Among Urban MSM: An Emerging Culture and HIV Risk Environment." AIDS and Behavior. 15(2):305-318. 2011.

Moise, Leonard.  SEE also: Ardito, Matthew; Martin, Milliam; Messitt, Timothy J.; Moss, Steven F.; Schanen, Brian C.; Zhang, S.

Moise, L., O. Koita, K. Sangare, L. Levitz, J. Rozehnal, Z. Koty, K. Younkara, M. Ardito, M. Roche, W. Martin and A. De Groot. "The GAIA Validation of Broadly Conserved Class 1 Epitopes in  West Africa (Abstract)." AIDS Research and Human Retroviruses. 27(10):A102. 2011.

Moise, Leonard, Leslie Cousens, Joann Fueyo and Anne S. DeGroot. "Harnessing the Power of Genomics and Immunoinformatics to Produce Improved Vaccines." Expert Opinion on Drug Discovery. 6(1):9-15. January 2011.

Moise, Leonard, Eric Gustafson, Matthew Ardito, Alan Rothman, William Martin and Anne S. De Groot. "Immunoinformatic Discovery of Potential Cross-Reactive T Cell Epitopes in the Measles Genome."  IN: Proceedings of the 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011.  p.589-593.

Moise, Leonard, R. Mark Butler, Jill Schriewer, Jinhee Lee, Sharon E. Frey, David B. Weiner, William Martin and Anne S. DeGroot. "VennVax, a DNA-Prime, Peptide-Boost Multi-T-Cell Epitope Poxvirus Vaccine, Induces Protective Immunity Against Vaccine Infection by T. Cell Response Alone." Vaccine. 29(3):501-511. 10 January 2011.

Moss, Steven F., Leonard Moise, Dong Soo Lee, Woojin Kim, Songhua Zhang, Jimtree Lee, Arlin B. Rogers, William Martin and Anne S. DeGroot. "HelicoVax Epitope-Based Therapeutic Helicobactere pylori Vaccination in a Mouse Model." Vaccine. 29(11):2085-2091. 3 March 2011.

Myers, Gavin M. and Kenneth H. Mayer. "Oral Preexposure Anti-HIV Prophylaxis for High-Risk U. S. Populations: Current Considerations in Light of New Findings." AIDS Patient Care & STDs. 25(2):63-71. February 2011.

Nelson, David R.  SEE: Gomez-Chiarri, Marta; Li, Ling.

Nolte, Frederick S., Beverly B. Rogers, Yi-Wei. Tang, M. Steven Oberste, Christine C. Robinson,  Kenneth Sue. Kehl, Harley A. Rotbart, Jose R. Romero, Ann-Christin. Nyquist and David A. Persing. "Evaluation of a Rapipd and Completely Automated Real-Time Reverse Transcriptase PCR Assay for Diagnosis of Enteroviral Meningitis." Journal of Clinical Microbiology. 49(2):528-533. February 2011.

Nunn, Amy, Nickolas Zaller, Alexandra Cornwall, Kenneth H. Mayer, Elya Moore, Samuel Dickman, Curt Beckwith and Helena Kwakwa. "Low Perceived Risk and High HIV Prevalence Among a Predominately African American Population Participating in Philadelphia's Rapid HIV Testing Program." AIDS Patient  Care and STDS. 25(4):229-235. April 2011.

Nunn, A., S. Dickman, A. Cornwall, C. Rosengard, H. Kwakwa, D. Kim, G. James and K. H. Mayer. "Social, Structural and Behavioral Drivers of Concurrent Partnerships Among African American Men in Philadelphia." AIDS Care. 23(11):1392-1399. November 2011.

O'Bryan, Joel M., James A. Potts, Herbert L. Bonkovsky, Anuja Mathew, Alan L. Rothman, for  the HALT-C Trial Group. " Extended Interferon-Alpha Therapy Accelerates Telomere Length Loss in Human Peripheral Blood T Lymphocytes." PLoS One. 6(8):e20922. August 4, 2011.

Opal, Steven M.  SEE also: Artenstein, A. W.; Christaki, E.; Delsesto, D.; Kerby, Matthew B.; LaRosa, Steven P.; Patrozou, Eleni; Tressel, S. L.; Wunderink, Richard G.

Opal, S. M. "Endotoxemia Before and After Surgical Repair for Congenital Heart Disease." American Journal of Respiratory and Critical Care Medicine. 184(11):1223-1224. December 1,2011.

Opal, S. M. "The Evolution of the Understanding of Sepsis, Infection, and the Host Response: A Brief History." Critical Care Nursing Clinics of North America. 23(1):1-27. March 2011.

Opal, Steven. "Immunologic Alterations and the Pathogenesis of Organ Failure in the ICU." Seminars in Respiratory & Critical Care Medicine. 32(5):569-580. October 2011.

Opal, Steven M., Yow-Pin Lim, Patricia Christofaro, Andrew W. Artenstein, Noubar Kessimian, David Del Sesto, Nicholas Parejo, John E. Palardy and Edward Sinyaporn. "Inter-A Inhibitor Proteins: A Novel Therapeutic Strategy for Experimental Anthrax Infection." Shock. 35(1):42-44. January 2011.

Patrozou, Eleni and Steven M. Opal. "What is Inflammation? What Is Sepsis? What Is MODS?" Evidence-Based Critical Care. 2011.  p.151-156.

Quddus, M. Ruhul, C. James Sung, Cunxian Zhang, Richard G. Moore, Joyce J. Ou, Margaret M. Steinhoff and W. Dwayne Lawrence. "The Presence and Location of Epithelial Implants and Implants With Epithelial Proliferation May Predict a Higher Risk of Recurrence in Serous Borderline Ovarian Tumors: A Clinicipathologic Study of 188 cases." Human Pathology. 2011.

Rego, M. A., J. A. Harney, M. Markio, M. Shen and N. G. Howlett. "Regulation of the Activation of the Fanconi Anemia Pathway by the p21 Cyclin-Dependent Kinase Inhibitor." Oncogene. 2011.

Rhieu, Steve Y., Andrew J. Annalora, Rose M. Gathungu, Paul Vouros, Milan R. Uskokovic, Inge Schuster, G. Tayhas Palmore, G. Satyanarayana Reddy. "A New Insight Into the Role of Rat Cytochrome P450 24A1 in Metabolism of Selective Analogs of 1 Beta,25-dihydroxyvitamin D3." Archives of Biochemistry & Biophysics. 509(1):33-43. May 2011.

Rogers, Beverly B.  SEE: Dondas, Nicola E.; Hopley, Richard; Khokhar, S. K.; Nolte, F. S.

Rosenberger, Joshua G., Michael Reece, David S. Novak and Kenneth H. Mayer. "The Internet as a Valuable Tool for Promoting a New Framework for Sexual Health Among Gay Men and Men Who Have Sex With Men." AIDS and Behavior. 15(S1):88-90. 2011.

Rothman, Alan L.   SEE also: Anderson, Kathryn B.; Endy, Timothy; Frieberg, H.; Hatch, Steven; Mathew, Anuja; Moise, Leonard; O' Bryan, Joel M.; Smith, Heidi L.; Srikiatkhachorn, Anon.

Rothman, A. L. "Immunity to Denguse Virus: A Tale of Original Antigenic Sin and Tropical Cytokine Storms." Nature Reviews. Immunology. 11(8):532-543. July 15, 2011.

Safran, Steven A., Conall O'Cleriggh, Margie R. Skeer, Jeffrey Driskell, Brett M. Goshe, Charles Covatney and Kenneth H. Mayer. "Demonstration and Evaluation of a Peer-Delivered Individual-Tailored HIV Prevention Intervention for HIV-Infected MSM in Their Primary Care Setting." AIDS and Behavior. 15(5):949-958. July 2011.

Sangarek, K., O. Koita, K. Tourkara, C. M. Boyle, L. Levitz, J. Rozehnal, Y. Kone, Z. Koty, M. A. Ardito, W. D. Martin and A. De Groot. "The GAIA HIV Vaccine Progress Report: Further Validation of Broadly Conserved Class 1 Epitopes in West Africa (Abstract)." AIDS Research and Human Retroviruses. 27(10):A102. October 2011.

Saravanan, S., V. Madhavan, K. G. Murugavel, P. Balakrishnan, S. S. Solomon, S. Umapathy, R. Kantor, N. Kumarasamy, T. Yepthomi, D. M. Smith, K. H. Mayer and S. Solomon. "The Association Between HIV-1 Subtype C Antiretroviral Resistance and HLA Prevalence in Southern India." Journal of Acquired Immune Deficiency Syndromes. 57(1):e17-e19. May 1, 2011.

Saravanan, S., V. Madhavan, P. Balakrishnan, S. S. Solomon, N. Kumarasamy, K. H. Mayer, G. Waldrop, S. Solomon and D. M. Smith. "HIV-1 Reverse Transcriptase Nucleotide Substitutions in Subtype C-Infected Drug-Naive, and Treatment-Experienced Patients in South India." Journal of Acquired Immune Deficiency Syndromes. 58(3):e94-e95. November 1, 2011.

Schanen, Brian C., Anne S. De Groot, L. Moise, Matt Ardito, Elizabeth McClaine, William Martin, Vaughn Wittman, William L. Warren and Donald R. Drake III. "Coupling Sensitive In Vitro and In Silico Techniques to Assess Cross-Reactive CD4+ T Cells Against the Swine-Origin H1Ni Influenza Virus." Vaccine. 29(17):3299-3309. April 2011.

Schoenfisch, Ashley L., Sheila C. Dollard, Minal Amin, Lytt I. Gardner, Kenneth Mayer, Anne Rompalo, Jack D. Sobel and ichael. J. Cannon. "Cytomegalovirus (CMV) Shedding Is Highly Correlated With Markers of Immunosuppression in CMV-Seropositive Women." Journal of Medical Microbiology. 60(6):768-774. June 2011.

Sharma, Vaneet K., Paul Vouros and James Glick. "Mass Spectrometric Based Analysis, Characterization and Applications of Circulating Cell Free DNA Isolated From Human Body Fluids." International Journal of Mass Spectrometry. 304(2/3):172-183. July 2011.

Simon, Rochelle A., Shi-Linig Peng, Liu Fang, M. Ruhul Quddus, Cunxian Zhang, Margaret M. Steinhoff, W. Dwayne Lawrence and Cames J. Sung. "Tubal Metaplasia of the Endometrium With Cyctologic Atapia Analysis of p53, Ki-67, TERT, and Long-Term Follow-U." Modern Pathology. 24(9):1254-1261. 2011.

Singh, Kamalieet, Rochell A. Simon, Cunxian Zhang and M. Ruhul Quddus. "'Surface Epithelial Changes' in Uterine Endometoid Carcinoma Mimicking Micropapillary Serous Borderline Tumor of Ovary: Report of Two Causes and Review of Literature." Diagnostic Pathology. 6#3. January 2011.

Sivasubramanian, Murugesan, Matthew J. Mimiaga, Kenneth H. Mayer, Vivvek R. Anand, Carey V. Johnson, Priti Prabhugate and Steven A. Safren. "Suicidality, Clinical Depression, and Anxiety Disorders Are Highly Prevalent in Men Who Have Sex With Men in Mumbai, India: Findings From a Community-Recruited Sample." Psychology. Health & Medicine. 16(4):450-462. August 2011.

Smith, Heidi L., Thomas P. Monath, Pamela Pazoles, Alan L. Rothman, Diane M. Casey, Masanori Terajima, Francis A. Ennis, Farshad Guirakhoo and Sharone Green. "Development of Antigen-Specific Memory CD8+ T Cells Following Live-Attenuated Chimeric West Nile Virus Vaccination. " Journal of Infectious Diseases. 203(4):513-522. 15 February 2011.

Spero, Diane.  SEE: De Groot, Anne S.

Sperry, Jay F.  SEE: LaCroix, R.

Srikiatkhachorn, Anon, Alan L. Rothman, Robert V. Gibbons, Nopporn Sittisombut, Prida Malasit, Francis A. Ennis, Suchitra Nimmannitya and Siripen Kalayanarooj. "Dengue -- How Best to Classify It." Clinical Infectious Diseases. 53(6):563-567. 15 September 2011.

Sung, C. James.  SEE: Quddus, M. Ruhul.; Simon, Rochelle. A. Xiong, J.; Zhang, Cuixian.

Tantravahi, Umadevi.  SEE: Koide, Keiko.; Massingham, Lauren J.

Taylor, L. E., A. K. DeLong, M. A. Maynard, S. Chapman, P. Gholam, J. T. Blackard, J. Rich and K. H. Mayer. "Acuter Hepatitis C. Virus in an HIV Clinic: A Screening Strategy, Risk Factors, and Perception of Risk." AIDS Patient Care and STDS. 25(10):571-577. October 25, 2011.

Taylor, Lynn E., Marisa Holubar, Kunling Wu, Ronald J. Bosch, David L. Wyles, John A. Davis, Kenneth H. Mayer, Kenneth E. Sherman and K. T. Tashima. "Incident Hepatitis C Virus Infection Among US HIV-Infected Men Enrolled in Clinical Trials." Clinical Infectious Diseases. 52(6):812-818. March 15 2011.

Thomas, B., M. J. Mimiaga, S. Kumar, S. Swaminathan, S. A. Safren and K. H. Mayer. "ZHIV in Indian MSM: reasons for z Concentrated Epidemic & Strategies for Prevention." Indian Journal of Medical Research. 134(6):920-929. December 2011.

Tidey, Jennifer W., Damaris J. Rohsenow, Gary B. Kaplan, Robert Swift and Natesha Reid. "Effects of Contingency Management and Bupropion on Cigarette Smokers With Schizophrenia." Psychopharmacology. 217(2):279-287. September 2011.

Tressel, Sarah L., Nichole C. Kaneider, Shogo Kasuda, Caitlin Foley, Georgios Koukos, Karyn Austin, Anika Agarwal, Lidija Covic, Steven M. Opal and Athan Kuliopulos. "A Matrix Metalloprotease-PAR1 System Regulates Vascular Integrity, Systemic Inflammation and Death in Sepsis." EMBO Molecular Medicine. 3(7):370-384. July 2011.

Venkatesh, K. K., A. van der Straten, K. H. Mayer, K. Blanchard, G. Ramjee, M. N. Lurie, T. Chipato, N. S. Padian and G. de Bruyn. "African Women Recently Infected With HIV-1 and HSV-2 Have Increased Risk of Acquiring Neisseria Gonorrhoeae and Chlamydia Tracchomatis in the Methods for Improving Reproductive Health in Africa Trial." Sexually Transmitted Diseases. 38(6):562-570. June 2011.

Venkatesh, K. K., G. de Bruyn, K. H. Mayer, H. Cheng, K. Blanchard, G. Ramjee, T. Chipato, E. W. Triche, N. S. Padian and A. Van der Straten. "Changes in Sexual Risk Behavior Before and After HIV Seroconversion in Southern African Women Enrolled in a HIV Prevention Trial." Journal of Acquired Immune Deficiency Syndromes. 57(5):435-441. August 15, 2011.

Venkatesh, K. K., T. P. Flanigan and K. H. Mayer. "Is Expanded HIV Treatment Preventing New Infections? Impact of Antiretroviral Therapy on Sexual Risk Behaviora in the Development World." AIDS. 25(16):1939-1949. October 23, 2011.

Venkatesh, K. K., A. van der Straten, H. Cheng, E. T. Montgomery, M. N. Lurie, T. Chipato, G. Ramjee, K. Blanchard, N. S. Padian, K. H. Mayer and G. de Bruyn. "The Relative Contribution of Viral and Bacterial Sexually Transmitted Infections on HIV Acquisition in Southern African Women in the Methods for Improving Reproductive Health in Africa Study." International Journal of STD & AIDS. 22(4):218-224. April 2011.

Venkatesh, Karlik K., A. K. Srikrishnan, Steven A Safren, Elizabeth W. Triche, E. Thamburaj, Lakshmi Prasad, M. Suresh Lurie, M. S. Kumar, N. Kimarasamy, Suniti Solomon and Kenneth H. Mayer. "Sexual Risk Behaviors Among HIV-Infected South Indian Couples in the HAART Era: Implications for Reproductive Health and HIV Care Delivery." AIDS Care. 23(6):722-733. June 2011.

Venkatesh, Karlik K., Soumya Swaminathan, Jason R. Matthews and Kenneth H. Mayer. "Tuberculosis and HIV Co-Infection Screening and Treatment Strategies." Drugs. 71(9):1133-1152. 2011.

Vouros, Paul.  SEE: Liao, Qing; Rhieu, Steve Y.; Sharma, Vaneet K.

Wierda, D., A. S. De Groot and B. Rup. "Immuniogenicity of Biopharmaceuticals."  IN: Human Immunotoxicology: From Mechanisms and Animal Models to Man. Wiley. 2011.

Wunderink, Richard G., Pierre-Francois Laterre, Bruno Francois, Dominique Perrotin, Antoniio Artigas, Luis Otero Vidal, Suzana M. Lobo, Jorge San Juan, Sung Chul Hwang, Thierry Dugernier, Steven LaRosa, Xavier Wittebole, Jean-Francais Dhainaut, Christopher Doig, Meryl H. Mendelson, Christian Zwingelstein, Guoqin Su and Steven Opal on Behalf of the CAPTIVATE Trial Group."Recombinant Tissue Factor Pathway Inhibitor in Severe Community-Acquired Pneumonia A. Randomized Trial." American Journal of Respiratory and Critical Care Medicine. 183(11):1561-1568. June 1, 2011.

Xiong, J., M. He, C. L. Jackson, V. Brees, C. J. Sung, M. M. Steinhoff, M. R. Quddus and W. D. Lawrence. "K-ras Mutations in Endometrial Carcinoma of Uterus-Molecular and Morphological Correlation (Abstract)." Laboratory Investigations. 91(Suppl.1):270. February 2011.

Xiong, J., M. He, C. L. Jackson, V. Brees, C. J. Sung, M. M. Steinhoff, M. R. Quddus and W. D. Lawrence. "K-ras Mutations in Endometrial Carcinoma of Uterus-Molecular and Morphological Correlation (Abstract)." Modern Pathology. 24(Suppl.1):270A. 2011.

Zhang, Cuixian.  SEE also: Lomme, Michele; Quddus, M. R.; Simon, Rochelle A.; Singh, Kamaljeet.

Zhang, C., M. R. Quddus, C. J. Sung, R. G. Moore and W. D. Lawrence. "Vulvar Encapsulated Solid Papilaryy Carcinoma With Neuroendocrine Differentiation: A Case Report." International Journal of Surgical Pathology. 2011.

Zhang, S., L. Moise and S. F. Moss. "H. pylori Vaccines: Why We Still Don't Have Any." Human Vaccines. 2011.


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