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Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2011

Fisheries, Animal & Veterinary Science

Able, Kenneth W., Mark C. Sullivan, Jonathan A. Hare, Gretchen Bath-Martin, J. Christopher Taylor and Roland Hagan. "Larval Abundance of Summer Flounder (Paralichthys dentatus) as a Measure of Recruitment and Stock Status." Fishery Bulletin. 109(1):68-78. January 2011.

Able, Kenneth W., Dennis M. Allen, Jonathan A. Hare, Donald E. Hoss, Katrin E. Marancik, Pierce M. Powels, David E. Richards. J. Christopher Taylor, Harvey J. Walsh, Stanley M. Warlen and Charles Wenner. "Life History and Habitat Use of the Speckled Worm Eel, Myrophis punctatus, Along the East Coast of the United States." Environmental Biology of Fishes. 92(2):237-259. 2011.

Babanding, K. and M.A. Rice. Results of a Preliminary
Shoreline Shellfish Sanitary Survey near Banjul, Gambia Conducted on
18 June 2011
. Gambia-Senegal Sustainable Fisheries Project, Coastal
Resources Center, University of Rhode Island. 2011.  6p.

Beck,  Michael W., Robert D. Brumbaugh, Laura Airoldi, Alvar Carranza, Loren D. Coen, Christine Crawford, Omar Defeo, Graham J. Edgar, Boze Hancock, Matthew C. Kay, Hunter S. Leinen, Mark W. Luckenbach, Caitlin L. Toropova, Guofan Zhang and Ximing Guo. "Oyster Reefs at Risk and Recommendations for Conservation, Restoration, and Management." Bioscience. 61(2):107-116. February 2011.

Bengtson, David ASEE: Byron, Carrie; Mateo; Enterria, A.

Bolton, Alan B., Larry. B. Crowder, Mark G. Doud, Sandra L. MacPherson, John A. Musick, Barbara A. S hroeder, Blair E. Witherington, Kristy J. Long and Melissa L. Snover. "Quantifying Multiple Threats to Endangered Species: An Example From Loggerhead Sea Turtles." Frontiers in Ecology and the Environment. 9(5):295-301. June 2011.

Bradley, Terence M.  SEE: Phelps, Michael P.

Brumbaugh, Robert D.  SEE: Beck, Michael; Ermagassen, Philine Zu; Hancock, Boze.

Byron, Carrie, Jason Link, Barry Costa-Pierce and David Bengtson. "Calculating Ecological Carrying Capacity of Shellfish Aquaculture Using Mass-Balance Modeling: Narragansett Bay, Rhode Island." Ecological Modelling. 222(10):1743-1755. 2011.

Byron, Carrie, David Bengtson, Barry Costa-Pierce and John Calanni. "Integrating Science Into Management: Ecological Carrying Capacity of Bivalve Shellfish Aquaculture." Marine Policy. 35(3):363-370. May 2011.

Byron, Carrie, Jason Link, Barry Costa-Pierce and David Bengtson. "Modeling Ecological Carrying Capacity of Shellfish Aquaculture in Highly Flushed Temperate Lagoons." Aquaculture. 314(1-4):87-99. April 2011.

Byron, Carrie, Jason Link, Barry Costa-Pierce and David Bengtson. "Translating Science for Management: Carrying Capacity of Bivalve Aquaculture (Abstract)." Journal of Shellfish Research. 30(2):490.  August 2011.

Byron, Carrie, David Bengtson, Barry Costa-Pierce and Jason Link. "Working Towards Consensus: Application of Carrying Capacity in Management of Bivalve Aquaculture (Abstract)." Journal of Shellfish Research. 30(2):490.  August 2011.

Colwill, Ruth M.  SEE also: Pelkowski, Sean D.

Colwill, Ruth M. and Robbert Creton. "Automated Imaging Avoidance Behavior in Larval Zebrafish." Neuromethods. 51:35-48. 2011.

Colwill, Ruth M. and Robbert Creton. "Imaging Escape and Avoidance Behavior in Zebrafish Larvae." Reviews in the Neurosciences. 22(1):63-73. 2011.

Colwill, Ruth M. and Robbert Creton. "Locomotor Behaviors in Zebrafish (Danio rerio) Larvae." Behavioral Processes. 86(2):222-229. February 2011.

Costa-Pierce, Barry A.  SEE also: Byron, Carrie.

Costa-Pierce, Barry A. Rhode Island Sea Grant College Program Strategic Plan 2011-2014. Rhode Island Sea Grant. 2011.  20p.

Cotton, Charles F., R. Dean Grubbs, Toby S. Daly-Engel, Patrick D. Lynch and John A. Musick. "Age, Growth and Reproduction of a Common Deep-Water Shark, Shortspine Spurdog (Squalus cf. mitsukurii), From Hawaiian Waters." Marine and Freshwater Research. 62(7):811-822. July 2011.

Dill, Jennifer A., Dale F. Leavitt and Stephen O'Shea. "An Investigation into the Biology and Management of a Monogeneen Trematode Parasite (Acolpenteron ureterocetas) Infecting the Largemouth Bass (Micropterus salmoides)  (Abstract)." Journal of Shellfish Research. 30(2):568. August 2011.

Dorrington, Tarquin, Luisa Villamil and Marta Gomez-Chiarri. "Upregulation in Response to Infection and Antibacterial Activity of Oyster Histone H4." Fish & Shellfish Immunology. 30(1):94-101 January 2011.

Dudzinski, Kathleen M., Managing Editor. Aquatic Mammals. Vol.37, 2011.

Dudkinski, Kathleen  M., Shani J. Brown, Marc Lamners, Klaus Lucke, David A. Mann, Peter Simard, Carrie C. Wall, Marianne Helene Rasmussen, Edda Elisabet Magnusdottir, Jakob Tougaard and Nina Erikson. "Trouble-Shooting Deployment and Recovery Options for Various Stationary Passive Acoustic Monitoring Devices in Both Shallow- and Deep-Water Applications." Journal of the Acoustical Society of America. 129(1):436-448. January 2011.

Ermgassen, Philine Zu, Robert Brumbaugh and Mark Spaulding. "Quantifying Oyster Reef Loss and Functionality at Estuarine and Ecological Scales: Towards Qualitative Goals for Restoration in the US  (Abstract)." Journal of Shellfish Research. 30(2):502-503. August 2011.

Enterria, Aludena, Michael Slocum, David A. Bengtson, P. D. Karayanakidis and C. M. Lee. "Partial Replacement of Fish Meat With Plant Protein Sources Singly and in Combination in Diets for Summer Flounder, Paralichthyus dentatus." Journal of the World Aquaculture Society. 42(6):753-765. December 2011.

Falwell, Elizabeth, Marta Gonzalez-Chiarri and Andrew S. Mount. "Microscopic Observations of Juvenile Oyster Disease Shells From Crasssostrea virginica (Abstract)." Journal of Shellfish Research. 30(2):503-504.  August 2011.

Falwell, Elizabeth, Marta Gonzalez-Chiarri and Andrew S. Mount. "Separation of the Hemocytes From Crassostrea virginicus Using Percoll Gradients and Labeling With A Methoprotienese Antibody  (Abstract)." Journal of Shellfish Research. 30(2):503. August 2011.

Fulton, Elizabeth, A. Smith, Jason S. Link, David Smith and Ingrid E. Van Putten. "Human Behaviour: The Key Source of Uncertainty in Fisheries Management." Fish and Fisheries. 12(1):2-17. March 2011.

Fulton, Elizabeth A., Jason S. Link, Isaac C. Kaplan, Marie Savina-Rolland, Penelope Johnson, Cameron Ainsworth, Peter Horne, Rebecca Gorton, Robert J. Gamble, Anthony D. M. Smith and David C. Smith. "Lessons in  Modelling and Management of Marine Ecosystems: The Atlantis Experience." Fish and Fisheries. 12(2):171-188. June 2011.

Gomez-Chiarri, Marta.  SEE also: Dorrington, Tarquin; Fallwell, Elizabeth; Karim, Murni, McDowell, Ian; Piesz, Jessica L.

Gomez-Chiarri, M. and David R. Nelson. Delivery of DNA Vaccines Into Fish by Immersion US Patent7871629. January 18, 2011.

Hancock, Boze.  SEE also: Beck, Michael W.

Hancock, Boze, Robert Brumbaugh and Summer Morlak. "Taking Shellfish Restoration to Scale: A Decade of Development in Restoring Shellfish Habitat (Abstract)." Journal of Shellfish Research. 30(2):513. August 2011.

Hancock, Boze, Robert Brumbaugh and Summer Morlak. "Taking Shellfish Restoration to Scale: A Decade of Development in Restoring Shellfish Habitat." Journal of Shellfish Research. 30(2):325-332. May 2011.

Hare, Jonathan A.   SEE also: Able, Kenneth W.; Fulton, Elizabeth; Johnson, Catherine L.; Link, Jason S.; Overholtz, W. J.; Richardson, David E.

Hare, Jonathan A.  "Book Review: Ecology of Estuarine Fisheries: Temperate Waters of the Western North Atlantic by Kenneth W. Able and Michael P. Fahay." Bulletin of Marine Science. 87(3):695-697. July 2011.

Johnson, Catherine L., Jeffrey A. Runge, K. Alexandra Curtis, Edward G. Durbin, Jonathan A. Hare, Lewis S. Incze, Jason S. Link, Gary D. Melvin, Todd D. O'Brien and Lou Van Guelpen. "Biodiversity and Ecosystem Function in the Gulf of Mexico: Pattern and Rate of Zooplankton and Pelagic Nekton." PLoS One. 6(1):e16491. January 31, 2011.

Karim, Murni, Marta Gomez-Chiarra and David Rowley. "Elucidating the Mechanisms of Protobiotic Activity in Protecting Larval Oysters From Bacterial Infection (Abstract)." Journal of Shellfish Research. 30(2):520. August 2011.

Kausch, Albert and Richard Rhodes. Genetic Improvement of Switchgrass, Biomass; Providing New Advanced Breeding Capabilities, Inmproved Energy Crop Varieties, Genomics and Transgenics for the Growing Biofuels Industry. 2011 DOE Feedstock Program. (DE-FG-36-08G)88070) 2011.

Kim, Chang-Ryul, Grazyna B. Sadowska, Stephanie A. Newton, Maricruz Merina, Katherine H. Petersson, James F. Padbury and Barbara S. Stonestreet. "Na+, K+-ATPase Activity and Subunit Protein Expression: Ontogeny and Effects of Exogenous and Endogenous Steroids on the Cerebral Control and Renal Cortex of Sheep." Reproductive Sciences. 18(4):359-373. April 2011.

Leavitt, Dale F.  SEE: Dill, Jennifer A.

Link, Jason S., Alida Bundy, William J. Overholz, Nancy Shackell, John Manderson, Daniel Duplisea, Jon Hare, Mariano Koen-Alonso and Kevin D. Friedlandf. "Ecosystem-Based Fisheries Management in the Northwest Atlantic." Fish and Fisheries. 12(2):152-170. June 2011

Link, Jason S., Janet A. Nye and Jonathan A. Hare. "Guidelines for Incorporating Fish Distribution Shifts Into a Fisheries Management Context." Fish and Fisheries. 12(4):461-469. December 2011.

MacGlafin, C. E., A. M. Zajac, K. A. Rego and K. H. Petersson. "Effect of Vitamin E Supplementation on Naturally Acquired Parasitic Infection in Lambs." Veterinary Parasitology. 175(3-4):300-305. 10 February 2011.

Mateo, Ivan, Edward G. Durbin, David A. Bengtson and Daisy Durant. "Variations in Growth of Tautog in Nursery Areas in Narragansett Bay and Rhode Island Coastal Ponds." Marine and Coastal Fisheries. 3(1):271-278. 2011.

McDowell, Ian, Chamilani Nikapitiya, Sae Bom Sohn and Marta Gomez-Chiarri. "Differential Gene Expression in Eastern Oyster Seed (Crassostrea virginica) in Response to the Bacterial Pathogen Roseovarius crassostrea (Abstract)." Journal of Shellfish Research. 30(2):531-532. August 2011.

Musick, John A.  SEE: Bolton, Alan B.; Cotton, Charles F.; Verissimo, Ana; Wallace, Bryan P.

Overholtz, W. J., J. A. Hare and C. M. Keith. "Impacts of Interannual Environmental Forcing and Climate Change on the Distribution of Atlantic Mackerel on the U.S. Northeast Continental Shelf." Marine and Coastal Fisheries. 3(1):219-232. 2011.

Papastamatiou, Yannis P., Daniel P. Cartamil, Christopher G. Law, Carl G. Meyer, Brad M. Wetherbee and Kevin N. Holland. "Scales of Orientation, Directed Walks and Movement Path Structure in Sharks." Journal of Animal Ecology. 80(4):864-874. July 2011.

Pelkowski, Sean D., Mrinal Kapoor, Holly A. Richendrfer, Xingyue Wang, Ruth M. Colwill and Robert Creton. "A Novel High-Throughput Imaging System for Automated Analyses of Avoidance Behavior in Zebrafish Larvae." Behavioral Brain Research. 223(1):135-144. September 2011.

Petersson, Katherine H.  SEE also: Kim, Chang-Ryul; MacGlafin, C. E.; Ramanathan, Ranjith.

Petersson, K. H., L. A. Connor, C. S. P. Wolfe and K. A. Rego. "Evaluation of Confirmatory Stains Used for Direct Microscopic Somatic Cell Counting of Sheep Milk." Journal of Dairy Science. 94(4):1908-1912. April 2011.

Phelps. Michael P. and Terence M. Bradley. "The Potential of Enhancing Muscle Growth in Cultured Fish Through the Inhibition of Members of the Transforming Growth Factor Beta Superfamily." Aquaculture Biotechnology. 20-11.  p.291-302.

Piesz, Jessica L. and Marta Gomez-Chiarra. "Matrix Metalboprotineases and Hemocyte Migration in the Eastern Oyster Crassostrea virginia (Abstract)." Journal of Shellfish Research. 30(2):543. August 2011.

Ramanathan, Ranjith, Richard A. Mancini, Joseph Poulsen, Shuang Yin, Nantawat Tatiyaborworthen, Katherine H. Petersson, Qun Sun and Muralikrishna R. Konda. "Effects of Lactate on Ground Lamb Colour Stability and Mitochondria-Mediated Metmyoglobin Reduction." Food Chemistry. 126(1):166-171. May 1, 2011.

Rheault, Robert B.  SEE also: Stokesbury, Kevin D. E.

Rheault, Robert B. "Are Ecosystem Services Rendered by Shellfish Aquaculture Similar to Natural and Restored Beds? Abstract)" Journal of Fisheries Research. 30(2):547. 2012.

Rheault, Robert B. "Are Ecosystem Services Rendered by Shellfish Aquaculture Similar to Natural and Restored Beds?" Journal of Fisheries Research. 30(2):547-548. August 2011.

Rhodes III, Richard C.  SEE: Kausch, Albert P.

Rice, Michael A.  SEE also: Babanding, K.

Rice, Michael A. "Foreward."  IN: Tammi, Elaine and Karin A. Tammi. Scallops: A New England Cookbook. Pelican Pub. 2011.  p.13-14.

Rice, Michael A. "Independent View: An Eye-Opening Pension Report." South County Independent. September 15, 2011.  p.A7.

Rice, Michael A. "Independent View: Out-of-This-World Leadership." South County Independent. July 28, 2011.  p.A8.

Rice, Michael A. "Ocean Fish Farms Are A Pretty Good Deal." Providence Journal. May 4, 2011.

Rice, M.AStatus Report on Bivalve Aquaculture and Water
Quality Activities
.  Gambia-Senegal Sustainable Fisheries Project,
Coastal Resources Center, University of Rhode Island, Narragansett. 2011.
12p. (

Richardson, David E., Jonathan R. Hare, Michael J. Fogarty and Jason S. Link. "Role of Egg Production by Haddock in the Decline of an Atlantic Herring Population." Proceedings of the National Academy or Sciences of the United States. 108(33):13606-13611. August 16, 2011.

Stock, Charles. A., Michael A. Alexander, Nicholas A. Bond, Keith M. Brander,  William W. L. Cheung, Enrique N. Curchister, Thomas L. Delworth, John P. Dunne, Stephen M. Grioffies, Melissa A. Haltuch, Jonathan A. Hare, Anne B. Hollowed, P. Lehodey, S. A. Levin, J. S. Link, K. A. Rose, R. R. Rykaczewski, Jason L. Sarmineto, Ryan J. Stouffer, Franklin B. Schweing, Gabriel A. Vecchi and Francesco E. Werner. "On the Use of IPCC-Class Models to Assess the Impact of Climate on Living Marine Resources." Progress in Oceanography. 88(1-4):1-27. January-March 2011.

Stokesbury, Kevin D. E., Edward P. Baker, Bradley P. Harris and Robert B. Rheault. "Environmental Impacts Related to Mechanical Harvest of Cultured  Shellfish." IN: Shellfish Aquaculture and the Environment. 2011.  p.319-338.

Verissimo, Ana, Dean Grubbs, Jan McDowell, John Musick and David Portnoy. "Frequency of Multiple Paternity in the Spiny Dogfish Squalus acanthias in the Western North Atlantic." Journal of Heredity. 102(1):88-93. January 2011.

Wallace, Bryan P., Andrelan D. DiMatteo, A. B. Bolton, Milani Y. Chaloupka, Brian J. Hutchison, F. Alberto Abreu-Grobius, Jeanne A. Mortimer, Jeffrey A. Seminoff, Diego Amorocho, K.arenA. Bjorndal, Jerome Bourjea, Brian W. Bowen, Raquel Brisen Duenas, Paolo Casale, B. C. Choudhary, Alice Costa, Peter H. Dutton, Alejandro Fallabrino, Elena M. Finkbeiner, Alexandre Girard, Marc Girondot, Mark Hamann, Brendan J. Hurley, Milagros Lopez-Mendilaharsu, Maria Angela Marcovaldi, John A. Musick, Ronel Nei, Nicholas J. Pilcher, Sebastian Troeng, Blair Witherington and Roderic B. Mast. " Global Conservation Priorities for Marine Turtles." PLoS One. 6(9):e24510. September 28, 2011.

Wetherbee, Bradley M.  SEE: Papastamatiou, Yannis P.

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