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University Libraries
Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2013

Biological Sciences

Aires, T., C. Thornber and J. C. Swanson. "Differential Gene Regulation Patterns, Duringt Bloom and Non-Bloom Time Periods, of Ulva Rigida in Narragansett Bay (Rhode Island, USA) (Abstract)." Phycologia. 52(4):1. July 2013.

Anderson, Paul A.  SEE also: Huber, D. R.

Anderson, Paul A. "Acoustic Characterization of Seahorse Tank Environments in Public Aquaria: A Citizen Science Project." Aquacultural Engineering. 31(8):1261-1269. August 2013. Aires

Anderson, Paul A. and Barbara D. Petty. "Mixed Metazoan and Bacterial Infection of the Gas Bladder of the Lined Seahorse, Hippocampus erectus - A Case Report." Journal of Aquatic Animal Health. 25(1):45-52. March 1, 2013.

Azizi, Emanual and Thomas J. Roberts. "Variable Gearing in  a Biologically Inspired Pneumatic Activator Array." Bioinspiration & Biometrics. 8(2):026002. June 2013.

Balaban, J. B., A. P. Summers and C. D. Wilga. "Mechanical Properties of a Shark Jaw Support Structure (Poster Abstract)." Integrative & Comparative Biology. 53(S1):E9. April 2013.

Barry, J. P., K. R. Buck, C. Lovera, P. G. Brewer, B. A. Seibel, J. C. Drazen, M. N. Tamburri, P. J. Whaling, L. Kuhnz and E. F. Pane. "The Response of Abyssal Organisms to Low pH Conditions During a Series of CO-2-Release Experiments Simulating Deep-Sea Carbon Sequestration." Deep Sea Research II. 92:249-260. 2013.

Becker, E. A., R. Scott and J. F. Webb. "Diversity of Adult Lateral Line Morphologies Is Not Explained by Differences in Neuromast Patterning in Two Lake Malawi Cichlids (Abstract)." Integrative & Comparative Biology. 53(S1):E245. April 2013.

Blevins, E. and G. V. Lauder. "Swimming Near the Substrate: A Simple Robotic Model of Stingray Locomotion." Bioinspr Biomin. 8(1):016005. March 2013.

Card, Christopher J., Elizabeth J. Anderson, Samantha Zamberlan, Karin E. Krieger, Michael Kaproth and Becky L. Sartini. "Cryopreserved Bovine Spermatozoal Transcript Profile as Revealed by High-Throughput Ribonucleic Acid Sequencing." Biology of Reproduction. 88(2):49/1-49/9. February 2013.

Carlton, James T.  SEE: Edelist, Dor.

Cobb, J. Stanley.  SEE: Wahle, Richard A.

Edelist, Dor, Gil Rilov, Daniel Golani, James T. Carlton and Ehud Spanier. "Restructuring the Sea: Profound Shifts in the World's Most Invaded Marine Ecosystem." Biodiversity Research.  19(1):69-77. January 2013.

Elder, L. and B. Seibel. "The Effect of Thermal Stress and Hypoxia on the Hyperid Amphipod Phronima (Abstract)." Integrative & Comparative Biology. 53(S1):E62. April 2013.

Fish, Frank and George Lauder. "Not Just Going With the Flow: Modern Visualization Techniques Show That Aquatic Animals Can Modify Their Fluid Environment to Increase the Efficiency of Swimming and Food Collection." American Scientist. 101(2):114-123. March/April 2013.

Flammang, Brooke  E., S. Alben, P. G. Madden and George V. Lauder. "Functional Morphology of the Fin  Rays of Teleost Fishers." Journal of Morphology. 274(9):1044=1059. September 2013.

Flammang, Brooke  E. and George V. Lauder. "Pectoral Fins Aid in Navigation of a Complex Environment by Bluegill Sunfish Under Sensory Deprivation Conditions." Journal of Experimental Biology. 216(6):3084-3089. August 2013.

Fogarty, Michael J.  SEE: Lucey, Sean M.; Pinsky, M. L.

Goldsmith, M.arianR.   SEE Also: Suetsugu, Yoshitaka

Goldsmith, M. R. "Bombyx morio."  IN: Brenner's Encyclopedia of Genetics. Second Edition. 2013.  p.359-361.

Goldsmith, Marian, Editor. Journal of Insect Science. Vol.13, 2013.

Guidone, Michele and  Carol S. Thornber. "Examination of Ulva Bloom Species Richness and Relative Abundance Reveals Two Critically Co-Occurring Bloom Species in Narragansett Bay, Rhode Island." Harmful Algae.  24:1-9. April 2013.

Guidone, Michele, Carol S. Thornber, Bryan Wyson  and Charles J. O'Kelly. "Molecular and Morphological Diversity of Narragansett Bay (RI, URS) Ulva (Ulvales, Chlorophyta) Populations." Journal of Phycology. 49(5):979-995. 2013.

Havird, Justin C., Raymond P. Henry and Alan E. Wilson. "Altered Expression of Na+/K+-ATPase and Other Osmoregulatory Genes in the Gills of Euryhaline Animals in Response to Salinity Transfer: A Meta-Analysis of 59 Quantitative PCR Studies Over 10 Years." Comparative Biochemistry and Physiology Part D. Genomics & Proteomics. 8(2):131-140. June 2013.

Henry, Raymond P.  SEE: Havrid, Justin C.; Szczebak, Joseph T.

Heppner, Frank. "'Cargo  Train'? (Letter)" Providence Sunday Journal. June 2, 2013.  p.F7.

Heppner, Frank. No Heavy Lifting Required; 40 Years in the Academic Trenches. Ornis Press. 2013.  184p

Heppner, Frank. "Pushing Commuter Rail (Letter)." Providence Journal. February 21, 2013.  p.A17.

Heppner, Frank. "To the Editor ('Brain Article')." Providence Sunday Journal. June 2, 2013.  p.A11.

Huber, D. R., D. E. Neveu, C. M. Stinson, P. A. Anderson and I. K. Berzins. "Mechanical Properties of Sand Tiger Shark (Caecharias taurus) Vertebrae in Relation to Spinal Deformity." Journal of Experimental  Biology. 216(22):4256-4263. November 15, 2013.

Irvine, Steven Q. "Study of CIS-Regulatory Elements in the Ascidian Intestinalis." Current Genomics. 14(1):56-67. March 2013.

Killingbeck, K. T., Editorial Board. Journal of Arid Environments. Vol.90, 2013.

King, Andrew L.  SEE: Wilhelm, Steven W.

Kolbe, Jason J.  SEE also: Shaner, Pei-Jen.

Kolbe, Jason J., Brian R. Lavin, Russell L. Burke, Lorenzo Rugiero, Massimo Capula and Luca Luiselli. "The Desire for Variety: Italian Wall Lizard (Podarcis siculus) Populations Introduced to the United States Via the Pet Trade Are Derived From Multiple Native-Range Sources." Biological Invasions. 15(4):775-783. April 2013.

Krueger, William H. "Semi-Automatics Defined (Letter)." Providence Journal. January 23, 2013.  p.A15.

Lane, Christopher B.  SEE: Misner, Ian; Schneider, Craig W.

Lauder, George V.  SEE: Bevins, E.; Fish, Frank; Flammang, Brooke E.; Ruiz-Torres, Ricardo; Wen, L.

Liu, Baiming, Evan L. Preisser, Dong Chu, Huipeng Pan, Wen Xie, Shaoli Wang, Qingjun Wu, Xuquo Zhaio and Youyjun Zhang. "Multiple Forms of Vector Manipulation by a Plant-Infecting Virus: Bemisia tabaci and Tomato Yellow Leaf Curl Virus." Journal of Virology. 87(9):4929-4937. May 2013.

Liu, Baiming, Evan L. Preisser, Xiagyo Jiao, Hupeng Pan, Wen Xie, Shaoli L. Wang, Qingjun Wu and Youjun J. Zhang. "Plant-Mediated Changes in the Feeding  Behavior of an Invasive Whitefly." Environmental Entomology. 42(5):980-986. October 2013.

Lucey, Sean M. and Michael J. Fogarty. "Operational Fisheries in New England: Linking Fishing Patterns to Proposed Ecological Production Units." Fisheries Research. 141(S1):3-12. 2013.

Maia, Anabela and Cheryl A. Wilga. "Anatomy and Muscle Activity of Dorsal Fins in Bamboo Sharks and Spiny Dogfish During Turning Maneuvers."    . 274(4):1288-1298. November 2013.

Maia, Anabela and Cheryl A. Wilga. "Function of Dorsal Fins in Bamboo Shark During Steady Swimming." Zoology. 116(4):224-231. August 2013.

Marranzino, A. N., M. M. Frank, S. D. Lindemann, B. A. Guiffrida, K. Sipper, J. F. Webb and A. F. Mensinger. "Functional Morphology of Cephalic Protuberances in the Oyster Toadfish, Opsanus tau (Abstract)." Integrative & Comparative Biology. 53(S1):E325. April 2013.

Misner, Ian, Cedric Bicep, Philippe Lopez, Sebastien Halary, Eric Bapteste and Christopher Lane. "Sequence Comparative Analysis Using Networks: Software for Evaluating de Nova Transcript Assembly From Next-Generatrion Sequencing." Molecular Biology and Evolution. 30(8):1975-1986. August 2013.

Newton, Christina and Carol S. Thornber. "Ecological Impacts of Macroalgal Blooms on Salt Marsh Communities." Fisheries and Coasts. 36(2):365-376. March 2013.

Newton, C., M. Guidone and C. Thornber. "Impacts of Invasive Gracilaria vermiculophylla on the Benthic Invertebrates (Abstract)." Integrative & Comparative Biology. 53(S1):E155. April 2013.

Newton, Christina, Matthew E. S. Brachan and Carol Thornber. "Invasion of the Red Seaweed Heterosiphonia japonica Spans Biogeographic Provinces in the Western North Atlantic Ocean." PLoS One. 8(4):e62261.  April 24, 2013.

Nowinoski, L., J. Balaban and C. Wilga. "Shape Changes in the Hypoid Arch of Four Shark Species (Poster Abstract)." Integrative & Comparative Biology. 53(S1):E344. April 2013.

Orrock, John L., Evan L. Preisser, Jonathan H. Grabowski and Geoffrey C. Trussell. "The Cost of Safety: Refugees Increase the Impact of Predation Risk in Aquatic Systems." Ecology. 94(3):573-579. March 2013.

Pezet, Joshua, Joseph Elkinton, Sara Gomez, E. Alexa McKenzie, Micael Lavine and Evan Preisser. "Hemlock Woolly Adelgid and Elongate Hemlock Scale Induce Changes in Foliar and Twig Volatiles of Eastern Hemlock." Journal of Chemical Ecology. 39:109o0-1100. 2013.

Pinsky, M. L., B. Worm, M. J. Fogarty, J. L. Sarmiento and S. A. Levin. "Marine Taxa Track Local Climate Velocities." Science. 341(6151):1239-1242. September 13, 2013.

Preisser, Evan L.  SEE also: Liu, Baiming; Orrock, John L.; Pezet, Joshua; Raffer, Jamie L.

Preisser, Evan, Editor. Journal of Insect Science. Vol.13, 2013.

Preisser, Evan L. "Trait-Mediated Indirect Interactions: Ecological and Evolutionary Perspectives. Ecological Reviews." Quarterly Review of Biology. 88(4):541. December 2013.

Rafter, Jamie L., Anurag A. Agrawal and Evan L. Preisser. "Chinese Mantids Gut Toxic Monarch Caterpillers: Avoidance of Prey Defense?" Ecological Entomology. 38(1):76-82. February 2012.

Ramsay, J. B. and C. D. Wilga. "Preorbitals and Quadratomandibularis Function During Feeding in Little Skates, Leucoraja erinacea (Abstract)." Integrative & Comparative Biology. 53(S1):E175. April 2013.

Raposa Kenneth B.  SEE also: McKinney, Richard A.

Raposa, Kenneth Bryan, Richard A. McKinney and Scott Miller. "Songbird Responses to Land Preservation Within Southern New England Cluster Subdivisions." Journal of Sustainable Development. 6(11):26-42. November 2013.

Roberts, Thomas J.  SEE also: Azizi, Emanual.

Roberts, Thomas J. and N. Konow. "Hpw Tendons Buffer Energy Disspiation by Muscle." Exercise and Sports Science Review. 41(4):186-193. October 2013.

Ruiz-Torres, Ricardo, Oscar M. Curet, George V. Lauder and Malcolm A. MacIver. "Kinematics of the Ribbon Fin in Hovering and Swimming of the Electric Ghost Knifefish." Journal of Experimental Biology. 216(5):823-824. March 2013.

Sartini, Becky L.  SEE:  Card, Christopher J.

Schneider, Craig W. and Michael J. Wynne. "Second Addendum to the Synoptic Review of Red Algal Genera." Botanica Marina. 56(2):111-118. April 2013.

Schneider, Craig W., T. R. Popolizio and C. E. Lane. "A Distinctive Second New Species of Crassitegula (Rhodophyta, sebdeniales) From Bermuda Based on  Morphological and Molecular Data." Physiology. 98.2013.

Schwalbe, M. A. B. and C.  D. Wilga. "The Contributions of Sensory Morphology and Prey Detection Behavior to Tropic Niche Differentiation in Two Sand-Feeding Lake Malawi Cichlids (Abstract)." Integrative & Comparative Biology. 53(S1):E192. April 2013.

Seibel, Brad A.  SEE also: Barry, J. P.; Trubenbach, K.; Trueblood, Lloyd A.; Pezet, Joshua; Wishner, Karen F.

Seibel, Brad A. "The Jumbo Squid, Dosidicus gigas (Ommastrephidae), Living in Oxygen Minimum Zones II: Blood- Oxygen Bonding." Deep Sea Research II Topical Studies in Oceanography. 95:139-144. 15 October 2013.

Seibel, B. A. and J. J. Childress. "The Real Limits to Marine Life: A Further Critique of the Respiration Index." Biogeosciences. 10(5):2815-2819. 2013.

Shaner, Pei-Jen, Ying-Ru Cehn, Jhan-Wei Lin, Jason J. Kolbe and Si-Min Lin. "Sex-Specific Correlation of Individual Heterozygosity, Parasite Load, and Scalation Summery in a Sexually Dichromatic Lizard." PLoS One. 8(2):e56720. February 2013.

Suetsugu, Yoshitaka, Ryo Futahashi, Hiroyuki Kanamori, Keiko Kadono-Okuda, Shun-Ichi Sasanuma, Junko Narukawa, Masahiro Ajimura, Akiya Jouraku, Nobukazu Namiki, Michihiko Shimomura, Hideko Sezutsu, Mizuko Osanai-Futahashi, Masataka G. Suzuki, Takaaki Daimon, Tetsuro Shinoda, Kiyoka Taniai, Kiyosho Asakoka, Ryusuke Niwa, Shinpei Kawaoka, Susuma Katsuma, Toshiku Tamura, Hiroaki Noda, Masahiro Kasahara, Sumio Sugano, Yutaka Suzuki, Haurhiko Fujiwara, Hiroshi Kataoka, Kallare P. Arunkumar, Archana Tomar, Javaregowda Nagartaju, Marian R. Goldmsith, Qili Feng, Qingyou Xia, Kimiko Yanamoto, Toru Shimada and Kazuel Mita." Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori." G3-Genes Genomes Genetics. 3(9):1481-1492. September 1, 2013.

Szczebak, Joseph T., Raymond P. Henry, Fuad A. Al-Horani and Nanette Chadwick. "Anemonefish Oxygenate Their Anemone Hosts at Night." Journal of Experimental Biology. 216(6):970-976. March 2013; "Errata." 216(7):1350. April 2013.

Tapanila, L., J. Pruitt, A. Prudedl, C. D. Wilga, J. B. Ramsay, R. Schlader and D. A. Didler. "Jaws for a Spiral-Tooth Whorl: CT Images Reveal Novel Adaptation and Phylogeny in Fossil Helicoprion." Biology Letters. 9(2):20130057. February 27, 2013.

Thornber, Carol S.   SEE also: Aires, T.; Guidone, Michele; Newton, C.

Thornber, C. S., S. Rinehart, M. Guidone and J. D. Swanson. "Ecological Dynamics of Ulva Macroalgal Blooms (Abstract)." Phycologia. 52(4,Supp.):111. July 2013.

Thornber, Carol S., Subject Matter Editor. Ecology. 2013.

Thursby, Glen B. and Michael A. Lewis. "Protection Goals for Aquatic Plants." Integrative Environmental Assessment and Management. 9(1):168-169. January 2013.

Trubenbach, Katja, Maria R. Pegado, Brad A. Seibel and Rui Rosa. "Ventilation Rates and Activity Levels of Juvenile Jumbo Squid Under Metabolic Suppression in the Oxygen Minimum Zone." Journal of Experimental Biology. 216(3):359-368. February 1, 2013.

Trueblood, Lloyd A. and Brad A. Seibel. "The Jumbo Squid, Dosidicus gigas, (Ommastrephi dac), Living in Oxygen Minimum Zones I: Oxygen Consumption Rater and Critical Oxygen Partial Pressures."  Deep Sea Research Part II: Topical Studies in Oceanography. 79:122-140. September 2013.

Wahle, Richard A., Kathleen M. Castro, Olier Tully and J. Stanley Cobb. "Homarus."  IN: Lobsters: Biology, Management, Aquaculture and Fisheries. 2nd ed. Edited by Bruce F. Phillips.  Wiley-Blackwell. 20913.  p.221-258.

Webb, Jacqueline F.  SEE also: Becker, E. A.; Marranzino, A. N.

Webb, J. F. and A. Gillis. "Lateral Line Morphogenesis in Chondrichthyan vs, Osteichthyan Fishes: New Perspectives on an Old Problem (Abstract)." Integrative & Comparative Biology. 53(S1):E223. April 2013.

Webb, Jacqueline F. "Morphological Diversity, Development, and Evolution of the Mechanosensory Lateral Line System."  IN: Sheryl Coombs et al, Editors. The Lateral Line. Springer. (Springer Handbook of Auditory Research 48) 2013.  (eBook)

Wen, L., G. V. Lauder, J. C. Weaver, M. Lovac and R. J. Wood. "Hydrodynamics of Self-Propelling Flexible Synthetic Shark Skin Membranes (Abstract)." Integrative & Comparative Biology. 53(S1):E223. April 2013.

Wilga, Cheryl D.  SEE also: Balaban, J. B.; Maia, Anabela;  Nowinoski, I.; Ramsay, J. B.; Schwalbe, M. A. B.; Tapanila, L.

Wilga, C. and S. Sakai. "Strain in the Hyomandibular Cartilage of Elasmobranches  (Abstract)." Integrative & Comparative Biology. 53(S1):E225. April 2013.

Wilhelm, Steven W., Andrew L. King, Benjamin S. Twining, Gary R. LeCleir, Jennnifer M. De Bruyen, Robert F. Strzepek, Cynthia L. Breene, Stuart Pickmere, Michael J. Ellwood, Philip B. Boyd and David A. Hutchins. "Elemental Quotas and Physiology of a Southwestern Pacific Ocean Plankton Community as a Function of Iron Availability." Aquatic Microbial Ecology. 68(3):185-194. 2013.

Wishner, Karen F., Dawn M. Outram, Brad  A. Seibel, Kendra L. Daly and Rebecca L. Williams. "Zooplankton in the Eastern Tropical North Pacific: Boundary Effects of Oxygen Minimum Zone Expansion." Deep Sea Research. Part 1: Oceanographic Research Papers. 79:122-140. September 2013.

Albert, Bibb, Bullock, Caroselli, Costantino, Goertemiller,  Hammen, Harlin, Hauke, Hyland, Kass-Simon,  Koske,  Moseman-Valtierra, Roberts, Stolt, Twombly

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