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University Libraries
Faculty Publications
Compiled by Margaret J. Keefe

Faculty Publications 2013

Cell & Molecular Biology

Ahelrad, J. E., M. J. Mimiaga, C. Grosso and K. H. Meyer. "Trends in the Spectrum of Engagement in HIC Care and Subsequent Clinical Outcomes Among Men Who Have Sex With Men (MSM) at a Boston Community Health Center." AIDS Patient Care STDS. 27(5):287-296. May 2013.

Ajenifuja, K. O., J. C. Gage, A. C. Adepti, N. Wentzensen, C. Eklund, M. Reilly, M. Hutchinson, R. D. Burk and M. Schiffman. "A Population Based Study of Visual Inspection With Acetic Acid (VIA) for Clinical Screening in Rural Nigeria." International Journal of Gynecological Cancer. 23(3):507-512. March 2013.

Angione, Stephanie L., Zintis Inde, Christina M. Beck, Andrew W. Artenstein, Steven M. Opal and Anubhav Tripath. "Microdroplet Sandwich Real-Time RT-hPCR for Detection of Pandemic and Seasonal Influenza Subtypes." PLoS One. 8(9):273497. September 2013.

Arnstein, Andrew W., Thomas L. Higgins and Steven M. Opal. "Sepsis and Scientific Revolutions." Critical Care Medicine. 41(12):2770-2772. December 2013.

Assoumou, S. A., K. H. Mayer, L. Panther, B. P. Lines and J. Kim. "Cost-Effectiveness of Surveillance Strategies After Treatment for High-Grade Anal Dysplasia in High-Risk Patients." Sexually Transmitted Diseases. 40(40):298-303. April 2012.

Atoyan, Janet A., Andrew M. Staroscik, David R. Nelson, Erika L. Patenaude, David Potts and Jose A. Amador. "Microbial Community Structure of a Leachfield Soil: Response to Intermittent Aeration and Tetracycline Addiction." Water. 5(2):505-524. June 2013.

Bertin, Yolande, Frederique Chaucheyras-Durand, C. Robbe-Masselot, Alexander Durand, Anne de la Foye, Josee Harel, Paul S. Cohen, Tyrell Conway, Evelyne Forano and Christine Martin. "Carbohydrate Utilization by Enterohuemorrhagic Escheria coli O157:H7 in Bovine Intestinal Content." Environmental Microbiology. 15(2,S1):610-622. February 13, 2013.

Bicki, Alexandra, Adam Silva, Valene Joseph, Ryan Handoko, S. V. Rico, J. Burns, Anna Simonetti, Jordan Harrop, Jennifer Nedu and Anne S. De Groot. "A Nurse-Run Walk-in Clinic: Cost Effective Alternativer to Non-Urgent Emergency Department Use by the Uninsured." Journal of Community Health. 38(6):1042-1049. December 2013.

Blackmore, C. C., J W.  Edwards, C. Searles, D.  Wechter, R. Mecklenburg and G. S. Kaplan. "Nurse Practioner-Staffed Clinic at Virginia Mason Improves Care and Lowers Cost for Women With Benign Breast Conditions." Health Affairs. 32(1):20-26. January 2013.

Blashill, Aaron J., Kenneth H. Mayer, H. Crane, J. F. Magidson, C. Grasso and S. A. Safran. "Body Mass Index, Immune Status and Virological Control in HIV-Infected on Men Who Have Sex With Men." Journal of International Association Provid AIDS Care. 2013.

Boisvert, Rebecca Anne, Meghan A. Rego, Paul A. Maurizio, Azzinaro Mauro and Niall G. Howlett. "Characterization of a Putative Nuclear Localization Signal in the Franconi Anemia D2 Protein (Abstract)." FASEB Journal. 27:7578.1. April 2013.

Boisvert, Rebecca Anne, Meghan A. Rego, Paul A. Azzinarto,  Maurizio Mauro and Niall G. Howlett. "Coordinate Nuclear Targeting of the FANCD2 and FANCI Proteins Via a FAND2 Nuclear Localization Signal." PLos One. 8(11):281387. November 2013.

Brace, A. J., C. A. C. Coon, M. D. McCue, S. R. Williams and L. B. Martin. "Critical Amino Acid Allocation as a Mediator of Range Expansion in an Introduced Species  (Abstract)." Integrative & Comparative Biology. 53(S1):E252. April 2013.

Buchacz, K., R. K. Baker, F. J. Palella Jr., L. Shaw, P. Patel, K. A. Lichtenstein, J. S. Chmiel, C. Vellozzi, R,. Debes, K. Henry, E. T. Overton, T. J. Bush, E. Tedaldi, C. Carpenter, K. H. Mayer, J. T. Brooks, HIV Outpatient Investigators. "Disparities in Prevalence of Keo Chronic Diseases by Gender and Race/Ethnicity Among Antiretroviral-Treated HIV-Infected Adults in the US." Antivir Ther. 18(1):65-75. 2013.

Buell-Gutbrod, S. S., P.-L. Liew, M. R. Quddus, J. J. Ou, C. Zhang, W. D. Lawrence and C. J. Sung. "oMtor Over-Expression in Recurrent Low Grade Endometroid Adenocarcinomas (Abstract)." Laboratory Investigation. 93(S1):268A. 2013.

Camberg, Jodi L.  SEE: Genest, O.; Rea, Leslie.

Chan, Philip A., Shazeb Kaz, Amaad Rana, Ilyse Blazar, Collette C. Dejong, Kenneth H. Mayer, Thomas K. Huard, Kim Carleton, Fizza Gillani, Nicole Alexander, Zoanne Parillo, Timothy F. Flannigan and Rami Kantor. "New HIV Infections at Southern New England Academic Institutions: Implications for Prevention." AIDS Research and Human Retroviruses. 29(1):25-29. January 2013.

Chappell,  P. Dreux, LeAnn P. Whitney, Traci L. Haddock, Susan Menden-Deuer, Eric G. Roy, Mark L. Wells and Bethany D. Jenkins.  "Thalassiosira spp. Communities Composition Shifts in Response to Chemical and Physical Forcing in the Northeast Pacific Ocean." Frontiers in Microbiology. 4:1-4. September 2013.

Cohen, Paul S.  SEE: Bertin, Yolande; Maltby, Rosalie.

Collier, Lewis S., Jean Yves Herve and Lenore Martin. "Towards Independent Particle Reconstruction From Cryogenic Transmission Elecgtron Microscopy."  IN: 2013 ACM Conference in Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB. 20123.  p.525-534.

Cosgrove, D. M., M. Fisher, P. Gabow, G. Gottlieb, G. C. Halvorson, B. C. James, G. S. Kaplan, J. B. Perlin, R. Petzel, G. D. Steele and J. S. Toussaint. "Ten Strategies to Lower Costs, Improve Quality, and Engage Patients: The View From the Leading Health System CEOs." Health Affairs. 32(2):321-327. February 2013.

Cousins, L. P., Y. Su, E. McClaine, X. Li, F. Terry, R. Smith, J. Lee, W. Martin, D. W. Scott and A. S. De Groot. "Application of lgG-derived Natural Treg Epitops (lgG-deroived Trgitopes) to Antigen Specific Tolerance Induction in a Murine Model of Type 1 Diabetes." Journal of Diabetes Research. 2013:621693.

Cousins, L., L. Moise, F. Terry, W. Martin and A. DeGroot. "Immunogenic Biologics: Valkidation of Screening, Deimmunization and Tolerization Approaches (Abstract)." Journal of Immunology. 190:3251. May 1, 2013.

Cousins, L., F. Terry, M. Ardito, William Martin and A.  DeGroot. "In Silico High Throughput Pre-Clinical Determination of Monclonal Antibody Immunogenicity (Abstract)." Journal of Immunology. 190:3391. May 1, 2013.

Cousins, Leslie P., Nader Najafian, Federico Mingozzi, Wassim Elyaman, Bruce Mazer, Leonard Moise, Timothy J. Messitt, Yan Su, Mohamed Sayegh, Katherine High, Samia Khoury, David W., Scott and Anne S. De Groot. "In Vitro and In Vivo Studies of IgG-Derived Treg Epitopes (Tregitopes): A Promising New Tool for Tolerance Induction and Treatment of Autoimmunity." Journal of Clinical Immunology. 33(Suppl.1):S43-S49. 2013.

Cousens, Leslie P., Ryan Tassone, Bruce D. Mazzer, Vasanthi Ramchandran, David W. Scott and Anne DeGroot. "Tregitope Update: Mechanism of Action Parallels 1 v1g."  Autoimmunity Reviews. 12(3):436-443. January 2013.

Cousins, L., L. Moise, A. DeGroot. "Tregitops: The Active Ingredient in IVIG-Mediated to Induction (Abstract)."  Journal of Immunology. 190:5224. May 1, 2013.

DeGroot,  Anne S.  SEE also: Bicki, Alexandra; Cousens, Leslie P.; Eldakroury, Ahmed; Gutierrez, Aandreas; He, Youngqun; Hui, D. J.;  Inaba, H.; Jawa, Vibha; Liu, R.; Moise, Leonard; Poole, D. N.; Spero, Denice; Su, Y.; Wei, Ruicheng.

DeGroot, A., L. Cousins, N. Najafian, F. Mingozzi, W. Elamor, S. Khoury, Y. Su, D. Scott and W. Martin. "Antigen-Specific Tolerance Induction by Tregitopes in Vivo (Abstract)." Journal of Immunology. 190:4202. May 1, 2013.

De Groot, A. S., F. Terry, L. Cousins and W. Martin. "Beyond Humanization and De-immunization: Tolerization as a Method for Reducing the Immunogenicity of Biologics." Expert Review of Chemical Pharmacology. 6(6):651-662. November 2013.

DeGroot, A., C. Boyle, M. Ardito, F. Terry, H. Latimer, R. Tessonbe, M. Cole, L. Moise and W. Martin. "Cross-Reactive Influenz H1N1 T Cell Epitopes Identified by Immunoinformatic Methods Stimulate CD4+T Cell Responses (Abstract)." Journal of Immunology. 190:4303. May 1, 2013.

DeGroot, Anne S. "Do Tregitopes Have the Potential to Impact the Current Treatment Landscape of Autoimmune Diseases?" Expert Review of Clinical Immunology. 9)12):1155-1157. December 2013.

DeGroot, A., P. Bertino, P. Hoffman, C. Carbone, A. S. Khoury, Y. Su, D. Scott and W. Martin. "Highly Immunogenic Vaccine for Preparation and Therapy of Malignant Mesotheliona (Abstract)." Journal of Immunology. 190:1264. May 1, 2013.

DeGroot,  Anne S., Editorial Board. Human Vaccines and Therapeutics. Vol.9, 2013.

DeGroot, A., F. Terry, D. Spero, L. Cousins and W. Martin. "iVAX: A Sophisticated Suite From Online Vaccine Design Tools (Abstract)." Journal of Immunology. 190:3269. May 1, 2013.

De Groot, Anne S., Matthew Ardito, Fraqncis Terry, Lauren Levitz, Ted M. Ross, Leonard Moise and William Martin. "Low Immunogenicity Predicted for Emerging Avian-Origin H7N9: Implication for Influenza Vaccine Design." Human Vaccines and Immunotherapy. 19(5):950-956. May 2013.

De Groot, A. S., L. Einick, L. Moise, M. Chambers, J. Ballantyne, R. W. Malone, M. Ardito and W. Martin. "Making Vaccines 'on Demand': A Potential Solution for Emerging Pathogens and Biodefense?" Human Vaccines and Immunotherapy. 9(9):1877-1884. September 1, 2013.

De Groot, A. S. "Tregitopes Have the Potential to Impact the Current Treatment Landscape of Autoimmune Diseases?" Expert Review of Clinical Immunology. 9(12):1155-1161. December 2013.

DeGroot, A., L. Cousins, F. Mingozzi and W. Martin. "Treitope Peptides: The Active Pharmaceutical Ingredient of IVIG?" Clinical & Developmental Immunology. 2013:#493138.

DeGroot, Leslie J.  SEE: Inaba, H.

Dellinger, R. F., M. M. Levy, A. Rhodes, D. Annane, H. Gerlach, S. M. Opal, J. E. Sevransky, C. L. Spring, I. S. Douglas, R. Jaeschuke, T. M. Osborn, M. E. Nunnally, S. R. Townsend, R. M. Kleinpell, D. C. Angus, C. S. Deutschman, F. R. Machado, G. D. Rubenfeld, S. A. Webb, R. J. Beale, J. L. Vincent and R. Moreno. "Surviving Sepsis Campaign: International Guidelines for Management of Severe Sepsis and Sepsis Stroke: 2012." Critical Care Medicine. 41(2):580-637. February 2013.

Dellinger, R. F., Mitchell M. Levy, Andrew Rhodes, Djillali Annane, Herwig Gerlach, Steven M. Opal, Jonathan E. Sevransky, Charles L. Spring, Ivor S. Douglas, Roman Jaeschuke, Tiffany M. Osborn, Mark E. Nunnally, Sean R. Townsend, Konrad, Ruth M. Kleinpell, Derek C. Angus, Clifford S. Deutschman, Flavia R. Machado, Gordon D. Rubenfeld, Steven  Webb, Richard J. Beale, Jean-Louis Vincent, Rui Moreno and The Surviving Sepsis Campaign Guideline Committee The Pediatric Subgroup. "Surviving Septic/Shock Campaign: International Guidelines for Management of Severe Sepsis and Sepsis: 2012." Intensive Care Medicine. 39(2):165-228. February 2013.

Eklund, Claire.  SEE: Ajenifuja, K. O.

Eldakroury, Ahmed, Ericka P. Olivera, Alexandra Bicki, Rebecca F. Martin and Anne S. DeGroot. "Adherence of American Diabetes Association Guidelines in a Volunteer-Run Free Clinic for the Uninsured: Better Than Standards Achieved by Clinics for Insured Patients." Rhode Island Medical Journal. 96(1):25-29. January 2013.

Fedson, D. S. and S. M. Opal. "The Controversy Over H5Na Transmissability Research: An Opportunity to  Define a Practical Response to a Global Threat." Human Vaccine and  Immunotherapy. 9(5):977-986. February 2013.

Fuchs, J. D., M. E. Sobieszcyk, T. Madenwald, D. Grove, S. T. Karuna, M. Andrasik, A. Sherwat, G. Broder, K. Mayer, B. Koblkin and S. M. Hammer, and the HVTNH 505 Protocol. "Intentions Preexposue Prophylaxis Among Current Phase 28 Preventive HIV-1 Vaccine Efficiency Trial Participants." 63(3):259-262. July 1, 2013.

Fulweiler, R. W., S. M. Brown, S. W. Nixon and B. D. Jenkins. "Evidence and a Conceptual Model for the Co-Occurence of Nitrogen Fixation and Denitrification in Heterotrophic Marine Sediments." Marine Ecology Progress Series. 482:57-68. 2013.

Garg, Shikha, Lynn E. Taylor, Chris Grasso and Kenneth H. Mayer. "Prevalent and Incident Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men Engaged in Primary Care in a Boston Community Health Center." Clin Infectious Diseases. 56(10):1480-1487/ May 2013.

Genest, O., M. Reidy, T. O. Street, J. R. Hoskins, J. L. Camberg, D. A. Asgard, D. C. Maisson and S. Wickner. "Uncovering a Region of Heat Shock: Protein 90 Important for Client Binding in E. Coli and Chaperone Function in  Yeast." Mol Cell. 49(3):464-473. February 7, 2013.

Gopal, S., M. R. Patel, E. L. Yanik, S. R. Cole, C. J. Achenbach, S. Napravnik, G. A. Burkholder, E. G. Reid, B. Rodriguez,  G. Derek, K. H. Meyers, R. D. Moore, M. M. Kitahate, K. L.Richards and J. J. Eron. "Association of Early HIV Viremia With Mortality After HIV-Associated Lymphoma." AIDS. 2013.

Grohskopf, L. A., K. L. Chillag, R. Gvetadze, A. Y. Liu, M. Thimpson, K. H. Mayer, B. M. Collins, S. R. Pathak, B. O'Hara, M. L. Ackerns, C. E. Rose, R. M. Grant, L. A. Paxton and S. P. Buchbinder. "Randomized Trial of Clinical Safety of Daily Oral Tenofir Disoproxil Fumarate (TDF) Among HIV-Infected Men Who Have Sex With Men (MSM) in the United States." Journal of Acquired Immune Deficiency Syndromes. 2013.

Gutierrez, Andreas, Charles Bailey-Kellogg, Leonard Moise, Frances Terry, Karim Abdel Hady, Qibon Leng, Phyllis Losikoff, Nathan Verberkmors, Willian Martin, Alan Rothman and Anne DeGroot. "The Two-Faced T Cell Epitope: Examining the Host Microbe Interface With Janus-Matrix (Abstract)." Journal of Immunology.190:2-5.9  2013. 

Haddow, J. E., W. Y. Craig, G. E. Palomaki, L. M. Neveux, G. Lambert-Messerlian, J. A. Canick and F. D. Malione. "Impact of Adjusting for the Recipricol Relationship Between Maternal Weight and Free Thyroxine During Early Pregnancy." Thyroid. 2012.

Harte, C. B., G. I. Livingston, D. M. Sloan, B. W. Karnholz, L. E. Rosebruck, M. Fava and G. B. Kaplan. "Association Between Smoking and Heart Rate Variability Among Individuals With Depression." Annals of Behavioral Medicine. 46(1):73-81. August 2013.

Hatch, Steven, Aruna Sree, Sandra Tirrell, Brenda Torres and Alan L. Rothman. "Reply to 'Phenotypic Identification of Staphylococcus Intermedius May Be Inaccurate'." Journal of Clinical Microbiology. 51(2):735. February 2013.

He, M., V. Broese, S. Hang, C. X. Zhang, J. J. Xiong and C. Jackson. "BRAF V600E Mutation in Endometrial Adencarcinoma." Diagnostic Molecular Pathology. 22(1):35-40. March 2013.

He, Youngqun, Zhiwei Cao, Anne S. DeGroot, Vladimir Brusic, Christian Schonbach and Nikolai Petrovsky. "Computational Vaccinology and the ICoVax 2012 Workshop." BMC Bioinformatics. 14(S4):1-6. March 8, 2013.

Heinrichs, S. C., K. A. Leite-Morris, M. D. Guy, R. Goldberg, A. J. Young and G. B. Kaplan. "Dendritic Structural Plasticity in the Basolateral Amydala After Fear Conditioning and Its Extinction in Mice." Behavioral Brain Research. 248:80-84. July 1, 2013.

Heinrichs, S. C., K. A. Leite-Morris, A. M. Rasmussen and G. B. Kaplan. "Repeated Valproate Treatment Facilities Fear Extinction Under Specific Stimulus Conditions." Neuroscience Letters. 552:108-113. September 27, 2013.

Herrick, A. L., R. Stall, H. Goldhammer, J. E. Egan and K. H. Mayer. "Resilience as a Research Framework and as a Cornerstone of Prevention Research for Gay and Bisexual Men: Establishing a Context for Novel Prevention Interventions." AIDS Care. 2013.

Howlett, Niall.  SEE: Boisvert, Rebecca Anne; Mukherjee, Ananda; Nasrolahi, Shirazi Amir; Neira, Karissa L.

Hui, D. J., E. Basner-Tschakarjan, Y. Chen, R. J. Davidson, G. Buchlkis, M. Yazicioglu, A. Tai, D. W. Scott, PL. P. COPusenes, S. Zhou, A. S. DeGroot and F. Moingozzi. "Modulation of CD8+ T Cell Responses to AAV Vectors With lgG-Derived MHC Class 11 Epitopes." Molcular Therapy. 21(9):1727-1737. September 2013.

Hurley, J. C. and S. M. Opal. "Prognostic Value of Endotoxemia in Patients With Gram-Negative Bacteremia Is Bacterial Species Dependent." Journal of Innate Immunology. 5(6):555-564. 2013.

Inaba, H., L. Moise, W. Martin, A. S. DeGroot, J. Desrosiers, R. Tassone, G. Buchman, T. Akamizu and L. J. DeGroot. "Epiptope Recognition in HLA-DR3 Transgenic Mice Immunized to TSH-R Protein or Peptides." Endocrinology. 154(6):2234-2243.  June 2013.

Jawa, Vibha, Leslie Cousins, Michael Awward, Eric Wakshull, Harold Kropshofer and Anne S. De Groot. "T-Cell Dependent Immunogenicity of Protein  Therapeutics: Preclinical Assessment and Mitigation." Clinical Immunology. 149(3):534-555. December 2013.

Jean-Gilles, Dinorah, Liya Li, V. G. Vaidyanathan, Roberta King, Bongsup Cho, David R. Worthen, Clinton O. Chichester III and Navindra Seeram. "Inhibitory Effects of Polyphenol Punicalagin on Type-II Collagen Degradation In Vitro and Inflammation In Vivo." Chemico-Biological Interventions. 205(2):90-99. 25 September 2013.

Jenkins, Bethany D.  SEE: Chappell, P. D.; Fulweiler, R. W.

Kaplan, Gary B.  SEE also: Blackmore, C. C.; Cosgrove, D. M.; Harte, C. B.; Heinrichs, S. C.; Selberg, J.

Kaplan, Gary B. "Pursuing the Perfect Patient Experience." Front Serv Manag. 29(3):16-37. September 2013.

Karim, Murni, Wenjing Zhao, David Rowley, David Nelson and Marta Gomez-Charri. "Probiotic Strains for Shellfish Aquaculture: Protection of Eastern Oyster, crassostrea virginica, Larvae and Juveniles Against Bacteriasl Challenge." Journal of Shellfish Research. 32(2):401-408. August 2013.

Kausch, Albert P.  SEE also: Nelson, K.

Kausch, A. P., J. Hague, M. Tilelli, D. Cunha, L. Mellon, B. Kingsborough, A. Johnson. L. Perretta and K. Nelson. "Agriculture, Biotechnology and GMOs: Informing the Debate - a One Credit Educational Online Module (Abstract)." In Vitro Cellular & Developmental Biology - Animal. 49(7):565-566. August 2013.

Kausch, Albert P., Adam Deresienski, Joel Hague, Michael Tilelli, Stephen L. Dellaporta, Kimberly Nelson and Yi Lin. "Hybrid Plant Systems for Breeding and Gene Confinement in Bioenergy Crops."  IN: New and Future Developments in Catalysis Edited by Melvin J. Oliver and Yi Li. Wiley-Blackwell. 2013.  p.141-171.

Kausch, A. P. "In Vitro Cellular & Developmental Biology-Plant. 49(4):471-472. August 2013.

Kausch, Albert P., Joel Hague, Adam Deresienski. Michael Tilelli and Kimberly Nelson. "Male Sterility and Hybrid Pant Systems for Gene Confinement."  IN:  Plant Gene Containment, Edited by Melvin J. Oliver and Yi Li. Wiley-Blackwell. 2013.  p. 85-100.

Kausch, A. P., J. Hague, M. Tilelli, D. Cunha, L. Mellon, B. Kingsborough, A. Johnson. L. Perretta and K. Nelson. "Pharmaceutical Biotechnology: Bridging the Education Gap in the Past - Genomic (Abstract)." FASEB Journal. 2013.

King, Roberta S.   SEE also: Jean-Gilles, Dinorah; Yalcin, Emine Bihter.

King, Roberta S., Editorial Board. Drug Metabolism Letters. Vol.7, 2013.

Konikoff, J., R. Brookmeyer, A. F. Longosz, M. M. Cousins, C. Celum, S. P Buckbinder, G. R Seage 3rd, G. D. Kirk, R. D. Moore, S. H. Mehta, J. B. Margolick,J. Brown, K. H. Mayer, B. A. Kolbin, J. E. Justman, S. L. Hodder, T. C. Quinn, S. H. Eshleman and O. Laeyendecker. "Performance of a Limiting-Antigenavidity Enzyme Immunoassay for Cross-Sectional Estimation of HIV Incidence in the United States." PLos One. 8(122):e82772. December 27, 2013.

Li, Ling, Xiangyu Mou and David R. Nelson. "Characterization of Plp, a Phosphatidylchoine-Specific Phospholipase and Hemolysin of Vibrio anguilaarum." BMC Microbiology. 13(1):29. November 27, 2013.

Liu, R., J. Desosiers, B. Martin, L. Moise and A. DeGroot. "Immunogenicity Assessment of In Silico-Selected T-Cell Epitopes for a Burkholderisa Biodefense Vaccine (Abstract)."  Journal of Immunology. 190:4282. May 1, 2013.

Lu, S., R. Buell-Gutbrod, M. R. Quddus, J. Xiong, W. D. Lawrence and C. J. Sung. "Mismatch R Status in Recurrent Low Grade Endometroid and Adenocarcinomas(Abstract)." Laboratory Investigation. 93(S1):287A. 2013.

Maltby, Rosali, Mary P. Leatham-Jenson, Terri Gibson, Paul S. Cohen and Tyrrell Conway. "Nutritional Basis for Colonization Resistance by Human Commensal Escherichia coli Strains in HS and Nissle 1917 Against E. coli 0157:H7 in the Mouse Intestine." PLoS One. 8(1):e53957. January 2013.

Marcus, J. L., D. V. Glidden, K. H. Mayer, A. Y. Liu, S. P. Buchbinder, K. R. Amikco, V. McMahon, E. G. Kallas, O. Montoya-Herrera, J. Pilotto and R. M.  Corant. "No Evidence of Sexual Risk Compensation in the iPrEx Trial of Daily Oral HIV Peex Prophylaxis." PLoS One. 8(12):e81997. December 18, 2013.

Martin, Lenore.  SEE also: Collier, W. S.

Martin, Lenore, Editorial Board. Journal of Computational Biology and Bioinformatics Research. 2013.

Mayer, Kenneth H.   SEE also: Ahelrad, J. E.;  Assoumou, S. A.; Buchacz, K.; Chan, Philip; Fuchs, J. D.; Garg, Shikha; Gopol, S.; Grohskopf, L. A..; Herrick, A. L.; Konikoff, J.;  Krakower, D.; Marcus, J. L.;  Mimiaga, M.; O'Cleirigh, C.; Patel, V. V.; Reisner, S. L.; Saravanan, S.;  Sugarman, Jeremy;  Thomas, B.; Underhill, K.; Ventatesk, K.; Wade Taylor, Walensky, R. P.; S. J.; Yanik, E. L.

Meyer, Kenneth, Brian Gazzard, Jose M. Zuniga, K. Rivet Amico, Jane Anderson, Yusef Azad, Gus Cairns, Nikos Dedes, Chris Duncombe, Sarah J. Fidler, Reuben Granwich, Michael A. Horberg, Sheena McCormick, Julio S. Montaner, Helen Rees, Bruce Shackman and Papa Salif Sow, "Controlling the HIV Epidemic With Antiretrovirals: IAPAC Consensus Statement or Treatment as Prevention and Preexposure Prophylaxis." Journal of the International Association Project AIDS Care. 2013.

Mayer, K. H. and B. C. Zanoni. "HIV Chemoprophylaxis for Adolescents: Educable Moment, Not Magic Bullet." Clinical Infectious Disease. 2013.

Mayer, K. H. "Thinking About an AIDS End Game." Lancet. 382(903):1462-1464. November 2, 2013.

McCullogh, R. and S. M. Opal. "Human Recombinant Lactoferrin for Sepsis: Too Good to Be True?" Critical Care Medicine. 41(3):908-909. March 2013.

Mimiaga, M. J., K. B. Biello, M. Sivasubramanian, K. H. Mayer, V. R. Anand and S. A . Safren. "Psychosocial Risk Factors for HIV Sexual Risk Among Indian Men Who Have Sex With Men." AIDS Care. 2013.

Mimiaga, M. J., S. L. Reisner, E. F. Closson, N. Perry, B. Perkovich, T. Nguyen, N. N. Trang, H. X. Lan, D. D. Tbhien, K. H. Mayer and D. Colby. "Self-Perceived HIV Risk and the Use of Reduction Strategies Among Men Who Engage in Transactional Sex With Other Men in Ho Chi Minh Coty, Vietnam." AIDS Care. 2013.

Mimiaga, M. J., J. M. White, D. S. Krakower, K. B. Biello and K. H. Mayer. "Suboptimal Awareness and Comprehension of Published Preexpos Prophylastics Efficacy Results and Physicians in MA." AIDS Care. 2013.

Mimiaga, M. J., S. L. Reisner, C. Grasso, H. McCrave, S. A. Safron, M. M. Kitaherta, J. E. Scumachedr, W. C. Matthews and K. H. Mayer. "Substance Use Among HIV-Infected Patients Engaged in Primary Care in the United States: Findings From the Centers for AIDS Research Network of Integrated Clinical Systems Cohort." American Journal of Public Health. 2013.

Minhas, H. M., M. F. Pescolido, M. Schwede, J. Piasecka, J. Gaitanis, U. Tantravahi and E. Morrow. "An Unbalanced Loss of 10q26.2 and Gain of 11q25 in a Pedigree of Autism and Cerebellar Juvenile Pilocytic Astocytonama (Abstract)." Biological Psychiatry. 73(9):685. March 2013.

Minhas, H. M., M. F. Pescolido, M. Schwede, J. Piasecka, J. Gaitanis, U. Tantravahi and E. Morrow. "An Unbalanced Loss of 10q26.2 and Gain of 11q25 in a Pedigree of Autism and Cerebellar Juvenile Pilocytic Astocytonama." American Journal of Medical Genetics: Pt.A. 161(4):787-791. 2013.

Moise, Leonard J.  SEE also: DeGroot,  Anne S.; Ibaba, H.

Moise, Leonard, Anthony Marcello, Ryan Tassone, Leslie Cousens, William Martin and Anne S. DeGroot. "Building Better Biotherapeutics and Vaccines by Design: EpiVax, Inc., an Immunology Company." Rhode Island Medical Journal. 96(2):19-21. February 2013.

Moise, L., R. Tassone, H. Latimer, F. Terry, L. Levitz, J. P. Haran, T. M. Ross, C. M Boyle, W. D. Martin and A. S. DeGroot. "Immunization With Cross-Conserved H1N1 Influenza CD4(+)T-Cell Epitops Lowers Viral Burden in HLA DR3 Transgenic Mice." Human Vaccines and Immunotherapeutics. 9(10):2060-2008. October 1, 2013.

Moise, L., A. H. Gutierrez, C. Bailey-Kellogg, F. Terry, Q. Leng, K. M. Abdel Hady, N. C. Verberkmoes, M. B. Sztein, P. T. Losikoff, W. D. Martin, A. L. Rothman and A. S. De Groot. "The Two-Faced T Cell Epitope: Examining the Host-Microbe Interface With Janus Matrix."  Human Vaccines and Immunotherapeutics. 9(7):1577-1586. July 2013.

Moise, L., F. Terry, M. Ardito, R. Tassone, H. Latimer, C. Boyle, W. D. Martin and A. S. De Groot. "Universal H1Ni Influenze Vaccine Development: Identification of Concensus Class II Hemagglutinin and NeuraminidaseEpitopes Derived From Strains Ciculating Between 1980 and 2011."  Human Vaccines and Immunotherapetics.  9(7):1598-1607. July 1, 2013.

Moss, S. F., S. Zhaqng, J. Aporte, J. Derosiers, F. Terry, L. Fast, W. Martin, A. De Groot and L. Moise. "Harnessing Genomics and Immunoinformatics to Identify Immunogenic H. pylori Sequences for Vaccine Development (Abstract)." Helicobacteria. 19(S1):144. September.

Mou, Xiangyu, dward. J. Spinard, Maureen V. Driscoll, Weijing Zhao and David R. Nelson. "H-NS Is a Negative Regulator of the Two Hemolysin/Cytotoxin Gene Clusters in Vibrio anguillarum." Infection and Immunity.81(10):3566-3576.  October 2013.

Mukherjee, Anande,  Sandip Misra, Niall G. Howlett and Parimal Karmakar. "Multinucleation Regulated by the Akt/PTEN Signaling Pathway Is A Survival Strategy for HepG2 Cells." Mutation Research/Genetic Toxicology and Environmental Mutagenesis. 755(2):135-140. August 2013.

Nasrolahi, Shirazi Amir, Karissa Neira, Niall Howlett, Dindyal Mandal and Keykavous Parang. "Cyclic Peptide-Capped Gold Nanoparticles for Enhanced siRNA Delivery (Abstract)." Abstracts of Papers of the American Chemical Society. 2013. MEDI-352.

Nasrolahi, Shirazi Amir,  Rakesh K. Tiwari, Dindyal Mandal, Gonqin Sun and Keykavous Parang. "Cyclic Peptides Containing Fryptophan and Arginine as Src Kinose Inhibitors." Bioorganic and Medicinal Chemistry Letters. 23(11):3230-3234. June 1, 2013.

Neiro, Karissa L., Maurizio Maujro and Niall G. Howlett. "Chromatin Dynamics and the Fanconi Anemia DNA Damage Response Pathology (Abstract)." FASEB Journal. 969.1. 2012.

Nelson, David R.  SEE: Atoyan, Janet A.; Karim, Muni; Li, Ling; Mou, Xiangyu

Nelson, David. Associate Editor. BMC Microbiology. Vol.13, 2013.

Nelson, K., J. Hogue, M. Tilelli, D. Cunha, L. L. Mellon and A. P. Kausch. "Laboratory Internships in Plant Biotechnogy: An Inquiry-Driven Experimental Opportunity in Agricultural Biotechnology (Abstract)." FASEB Journal. April 2013.

Nelson, K., J. Hogue, M. Tilelli, D. Cunha, L. L. Mellon, B. Kingsborough, A. Johnson and A. P. Kausch. "Lifeedu: A Delivery Platform for a Massive Open Online Course on Biotechnology Intended for a General Audience (Abstract)." 565. 2013.

Nelson, K., J. Hogue, M. Tilelli, D. Cunha, L. L. Mellon, B. Kingsborough, A. Johnson and A. P. Kausch. "Lifeedu: A Delivery Platform for a Massive Open Online Course on Biotechnology Intended for a General Audience." In Vitro Cellular & Developmental Biology-Plant. 49(4):471. August 2013.

Nelson, K., J. Hogue, M. Tilelli, D. Cunha, L. Mellon, B. Kingsborough, A. Johnson, L. Peretta and A. P. Kausch. "A New Method for Recovery of Non-6 mo Hybrids From Wide Crosses Using Transgenics as Bridge Intermediates (Abstract)." 476. 2013.

O'Bryan, Joel M., Marcia Woda, Mary Co, Anju Mathew and Alan L., Rothman. "Telomere Length Dynamics in Human Memory T Cells Specific for Viruses Causing Acute or Latent Infecftions." BioMed Central. 2013.

O'Cleirigh, C., M. E. Newcomb, K. H. Mayer, M. Skeer, L. Traeger and S. A. Safren. "Moderate Levels of Depression Predict Sexual Transmission Risk in HIV-Infected MSM: A Longitudinal Analysis of Data From Six Sites Involved in a "Prevention for Positives" Study." AIDS Behavior. 2013.

Opal, Steven M.  SEE also: Angione, Stephanie L.; Arnstein, Andrew W.; Dellinger, R. F.; Fedson, D. S.; Hurley, J. C.; McCullogh, R.; Pop-Vicas, A.; Ramachandran, Girish; Sim, B. T.; Vincent, Jean-Louis; Wang, Jingjing; Wittlebole, X.

Opal, S. M. and R. P. Dellinger. "2B or Not 2B for Selective Decontamination of the Digestive Tract in the Surviving Sepsis Campaign Guidelines." Critical Care Medicine. 41(11):E386-E387. November 2013. "Author's Reply." 41(12):E488. December 2013.

Opal, S. "The Current Understanding of Sepsis and Research Priorities for the Future." Virulence. 5(1): October 23, 2013.

Opal, Steven M., Pierrre-Francois Laterres, Bruno Francois, Steven P. La Rosa, Derek C. Angus, Hean-Paul Mira, Xavia Wittebele, Thierry Dugernia, Dominiques Perrofin, Mark Tidswell, Luis Taurequi, Kenneth Krell, Jan Pachis, Takkeshi Takahahshi, Claus Peckelson,  Edward Cordasco, Chia-Sheng Chang, Sandra Oeyen, Naoki Aikkaua and Tatsuya Maruyama. "Effect of Eritoran, an Antagonist of MD-2-TLR4, on Mortality in Patients With Severe Sepsis, the ACCESS Randomized Trial." JAMA. 309(11):1154-1162. March 20, 2013.

Opal, S. M. and S. P. Larosa. "Recombinant Human Activated Protein C as a Therapy for Severe Sepsis: Lessons Learned?" American Journal of Respiratory and Critical Care Medicine. 187(10):1041-1043. May 15, 2013.

Pisharodi, Latha. "Mammary Analog Secretory Carcinoma of Salivary Gland: Cytological Diagnosis and Differential Diagnosis of an Unreported Entity." Cytopathology. 41(3):239-241. March 2013.

Poole, Danielle N., J. Kathleen Tracy, Lauren Levitz, Mali Rochas, Kotou Sangare, Shala Yekta, Karamocko Tounkare, Ben Aboubacar, Ousman Kotta, Mark Lurie and Anne S. De Groot. "A Cross-Sectional Study to Assess HPV Knowledge and HPV Vaccine Acceptability in Mali." PLoS One. 8(2):256402. 2013.

Pop-Vicas, A. and S. M. Opal. "Over-Distension of the Air-Ways by Mechanical Insult to Injury." Critical Care. 17(4):165. July 4, 2013.

Rabaa, Maia A., Chonticha Klungthong, In-Kyu Yoon, Edward C. Holmes, Piyaiwan Chinnawirotpisan, B. Thaisomboonsuk, Anpn Srikiatkhachorn, Alan L. Rothman, Darunee Tannitisupawong, Jared Aldstedt, Ananda Nisalak, M. P. Mammen, Robert V. Gibbons, Timothy P. Endy, Thanjalak Fansiri, Thomas W. Scott and Richard G. Jarman. "Frequent In-Migration and Highly Focal Transmission of Dengue Viruses Among Children in Kamphaeng Phet, Thailand." PLoS Neglected Tropical Diseases. 7(1):e1990. January 2013.

Ramachandran, Girish, Mohan E. Tulapurkar, Kristina M. Harris, Gila Arad, Anat Shirvan, Ronen Shemesh, Louis J. DeTolla, Cinzia Benazzi, Steven M. Opal, Raymond Kaempfer and Alan S. Cross. "A Peptide Antagonist of CD28 Signaling Attenuates of Toxic Shock and Necrotizing Soft-Tissue Infection Induced by Streptococcus pyogens." Journal of Infectious Diseases. 207(12):1869-1877. June 15, 2013.

Rea, Leslie, Joel Hoskins, Sue Wickner and Jodi L. Camberg. "Divalent Recognition of the E. coli Cytoskeletal Protein FtsZ by the ATP-Dependent Protease ClpXP." Biophysical Journal. 104(2,S1):571a. January 2013.

Reisner, S. L., J. M. White, K H. Mayer and M. J. Mimiaga. "Sexual Risk Behavior and Psychosocial Health Concerns of Female-to-Male Transgenderr Men Screening for STDS at an Urban Community Health Center." AIDS Care. 2013.

Rothman, Alan L.  SEE also: Gutierrez, Andreas; Hatch, Steven; Moise, Leonard; O'Bryan, Joel M.;  Rabaa, Maia A.; Yoom, I. K.

Rothman, Alan L., Editorial Board. Annals of Behavioral Medicine. Vol.44, 2013.

Rothman, Alan L, Editor. Dengue Virus. Springer. (Current Topics in Microbiology and Immunology, 338)  2013, 2010.

Rothman, Alan L., Associate Editor. PLoS Negle4cted Tropical Disease. 2013.

Saravanan, S., V. Madhaven, K. G. Morogard, G. Waldrop, S. S. Solomon, P. Balakrishnan, N. Kumaresomy, D. N. Smith, K. H. Mayer, S. Solomon and S. Thygarjan. "High Prevalence of Hepatitis Delta Virus Among Patients With  Chronic Hepatitis B Virus Infection and HIV-1 Hepatitis B Virus Endemic Region." Journal Int Assn Provid AIDS Care. 2013.

Selberg, J., P. Pronovost and G. Kaplan. "Culture Conscience. Leaders Talk Quality, Change Needed for Improvement ast Virtual Conference." Modern Healthcare 43(24):18,22. June 17, 2013.

Shirazi, Amir Nasrolahi, Rakesh Tiwari, Alex Brown, Dindyal Mandal, Gongqin Sun and Keykavous Parang. "Cyclic Peptides Containing Tryptophan and Arginine as Src Kinase Inhibitors." Bioorganic & Medicinal Chemistry Letters. 23(11):3230-3234. June 1, 2013.

Sim, B. T., S. K. Browne, M. Viglieni, D. Zachary, L. Rosenj, S. M. Holland and S. M. Opal. " Recurrent Burkholderia gladioli Suppurative Lymphadenitis Associated With Neutralizing Anti-I-12p70 Autoantibiodies." Journal of Clinical Immunology. 33(6):1057-1061. August 2013.

Spero, Denice.  SEE also: De Groot, Anne S.

Spero, Denice, Lauren Levitz and Anne S. DeGroot. "Report From the Field: Overview of the Sixth Annual Vaccine Renaissance Conference."  Human Vaccines and Immunotherapies. 9(7):1555-1577. July 1, 2013.

Spero, Denice. "'Reversing' Type 2 Diabetes: Can It Be Done?" Diabetes Self Management. 30(1):8,10-12,14-15. January-February 2013.

Spero, Denice, Guest Editor. "Showcasing Bioscience in Rhode Island."  Rhode Island Medical Journal. 96(2):15. February 2013.

Steinhoff, Margaret M.  SEE: Vang, Souriya;  Xiong, J.

Su, Y., R. Rossi, A. S. de Groot and D. W. Scott. "Regulatory T Cell Epitopes (Tregitopes) in lgG Induce Tolerance In Vivo and Lack Immunogenicity Per Se." Journal of Leukocyte Biology. 94(2):377-383. 2013.

Sugarman, Jeremy and K. H. Mayer. "Ethics and Pre-Exposure Prophylaxis for HIV Infection." Journal of Acquired Immune Deficiency Syndromes. 63(S2):S135-S139. July 2013.

Sun, Gongqin.  SEE: Shirazi, Amir Nasrolahi.

Sung, C. James.  SEE: Buell-Gutbrod, S. C.; Lu, S.; Xiong, J.

Underhill, K. and K. H. Mayer. "Sexual Behavior Among Users of Antiretroviral Pre-Exposure Prophylaxis." Lancet Infectious Disease. 13(12):996-997. December 2013.

Vang, Souriya, Hsin-Ta Wu, Andrew Fischer, Daniel H. Miller, Shannon MacLaughlan, Elijah Douglass, Margaret Steinhoff, Colin Collins, Peter J. Smith, Laurent Brand and Alexander S. Brodsky. "Identification of Ovarian Cancer Metastatic miRNAs." PLoS One. 8(3):e58226. 2013.

Ventatask, K. K., J. E. Becker, N. Kumaresamy, Y. M. Nakamura, K. H. Mayer, E. Losina, S. Suaminathan, T. P. Flannigen, R. P. Walesky and K. A. Freeberger. "Clinical Impact anfd Cost-Effectiveness of Expanded Voluntary HIV Testing in India." PLoS One. 8(5):e6406. May e31, 2013.

Vignish, R., N. Kumaresamy, S. Solomon, K. G. Murugaod, B. Babakrishnan, S. S. Solomon, K. H. Mayer, S. Wathirayan, Karen S. Poongulo, C. A. Benson and M. A. Friend. "The IRIS After Initiation of Antiretroviral Therapy Is Associated/Expension of Persistent Th1 Responses Against Myobacterium Tubersulosis." Journal of Acquired Immune Dev Systems. 2013.

Vincent, Jean-Louis, Steven M. Opal, John C. Marshall and Kevin J. Tracey. "Sepsis Definitions." Lancet. 381(9868):774-775. March 2013. "Reply." 38199885):2250. June 29, 2013.

Wade Taylor, S., C. O'Cleirigh, K. H. Mayer and S. A. Safren. "HIV-Infected Men Who Have Sex With Men Who Engage in Very High Levels of Transmission Risk Behaviors: Establishing a Context for Novel Prevention Interventions." Psychology, Health & Medicine. 2013.

Walensky, R. P. ... K. H. Mayer.... "Cost-Effectiveness of HIV Treatment as Prevention in  Seriodiscordant Couples." New England Journal of Medicine. 369(18):1715-1725. 2013.

Wang, Jingjing, Warrren Tai, Stephanie l. Angione, Amrita R. John, Steven M. Opal, Andrew W. Artenstein and Aunubhav Tripath. "Subtyping Clinical Specimens of Influenza by Use of a Simple Method to Amplify RNA Targets." Jurnal of Clinical Microbiology. 51(10):3324-3330. October 2013.

Wei, Ruicheng, Lijuan Xu, Na Zhang, Kai Zhu, Juhao Yang, Chunhui Yang, Chaoyang Deng, Zhaomin Zhu, Anne De Groot, Ralf Altmeyer, Mei Zhang and Qibin Leng. "Elevated Antigen-Specific Th2 Type Response Is Associated With the Poor Prognosis of Hand, Foot and Mouth Disease." Virus Research. 177(1):62-65. October 2013.

Wittlebole, X., S. De Roock and S. M. Opal. "A Historical Overview of Bacteriophage Therapy as an Alternative to Antibiodies for the Treament  of Bacterial Pathogens." Virulent. 4(8): August 13, 2013.

Xiong, J., M. He, C. Jackson, V. Breese, C. J. Sung, M. M. Steinhoff, M. R. Quddus, T. Tejadaberges and W. D. Lawrence. "Endometrial Carcinoma With Mucinois Differentiation and Kras G12d Mutation Is Associated With Lymph Node Metaastasis and Vaginal Recurrence (Abstract)." Laboratory Investigations. 93(S1):298A-299A.  2013.

Xiong, J., M. He, C. Jackson, V. Breese, C. J. Sung, M. M. Steinhoff, M. R. Quddus, T. Tejadaberges and W. D. Lawrence. "Endometrial Carcinoma With Mucinois Differentiation and Kras G12d Mutation Is Associated With Lymph Node Metastasis and Vaginal Recurrence (Abstract)." Modern Pathology. 26(S2):298A-299A. February 2013.

Yalcin, Emine Bihter, Vijay R. More, Marissa Neira, Zengiang James Lu, Nathan J. Cherrington, Angela L.  Slitt and Roberta S. King. "Downregulation of Sulfotransferase Expression and Activity in Diseased Human Livers." Drug Metabolism and Disposition.41(9):1642-1650. September 2013.

Yanik, E. L., S. NJapravnik, S. R. Cole, C. J. Achenback, S. Gopal, A. Olshane, M. Saag, D. P. Dittman, M. M. Kitahate, K. J. Mugavers, M. Saag, R. D. Moore, K. Mayer, W. C. Matthews, P. W Hunt, B.Rodriguez and J. J. Eron. "Incidence and Timing of Cancer in HIV-Infected Individuals Following Initiation of Combination Antiretroviral Therapy." Clinical Infectious Diseases. 2013.

Yoon, I. K., A. Srkiathachorn, L. Hermasn, D. Buddhari, T. W. Scott, R. G. Jarman, J. Aldstadt, A. Nisalek, S.Thammapalo,. S. Green, R. V. Gibbons, T. P. Endy, A. L. Rothman et al. "Characteristics of a Mild Dengue Virus Infection ion Thai Children." American Journal of Tropical Medicine and Hygiene. 89(6):1081-1087. December 2013.

Zhang, Cunxian.  SEE: Buell-Gutbrod, S. C.; He, M.

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